Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0289.Seq
         (598 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_06_0175 + 21350528-21351136                                         28   6.5  
06_01_0114 - 892599-893070,894115-894457,894896-895151                 28   6.5  
02_01_0753 - 5586705-5586766,5587864-5588056,5588154-5588423,558...    28   6.5  
12_01_0014 + 105422-105520,105598-105725,105939-106101,106198-10...    27   8.6  
11_01_0014 + 108647-108816,109704-109803,109891-110018,110232-11...    27   8.6  
02_05_1022 + 33570664-33570976,33572206-33573440,33573873-335740...    27   8.6  

>09_06_0175 + 21350528-21351136
          Length = 202

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = +1

Query: 340 PCCHLMQSPRRRKDQVSKNTGRP*CQDFRFPRIFPHPPST 459
           P  H  Q PRRR+  V ++ G    +  R PR    PP++
Sbjct: 61  PPLHHQQPPRRRRRAVEESRGGGGARRVRSPRTPSRPPNS 100


>06_01_0114 - 892599-893070,894115-894457,894896-895151
          Length = 356

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = -3

Query: 452 GGCGKIRGNRKSWHQGLPVFFETWSFRR 369
           GG G + GN K  +Q L  FF+ W  RR
Sbjct: 290 GGAGGMLGNVKHENQPLRPFFDEWPGRR 317


>02_01_0753 -
           5586705-5586766,5587864-5588056,5588154-5588423,
           5588522-5588687,5589049-5589209,5590065-5590181,
           5590269-5590549,5590750-5590833,5591100-5592542,
           5593167-5593575
          Length = 1061

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 14/29 (48%), Positives = 19/29 (65%)
 Frame = -1

Query: 214 MYLKLKGSCKRGCRARLHLRQALFLLDSR 128
           M+L L G   +GC  +LHLR  +FL +SR
Sbjct: 694 MWLPLDGRFPQGCEPKLHLR--IFLNNSR 720


>12_01_0014 +
           105422-105520,105598-105725,105939-106101,106198-106310,
           106787-106825,107026-107109,107193-107241,107331-107422,
           107680-107809,107906-107982,108058-109676,110024-110221,
           110287-110825
          Length = 1109

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 21/73 (28%), Positives = 36/73 (49%)
 Frame = -2

Query: 531 LIPPVQADDISFTALAEHKVINKHGTRRVRENTRKSKILASRSSSIL*DLVFPSSWGLH* 352
           ++PP  A+D S++A+   K   K+G   +     +S++    SSS    L   +SWG   
Sbjct: 274 VLPP-PAEDFSYSAVVAAKHPIKNG---ITNTANQSRLSPPNSSSGRSTLPPAASWGHRD 329

Query: 351 MTTRILAAHLTNS 313
           + TR  A  + +S
Sbjct: 330 LNTRTTATGVASS 342


>11_01_0014 +
           108647-108816,109704-109803,109891-110018,110232-110394,
           110491-110603,111080-111118,111319-111402,111486-111534,
           111624-111715,111999-112128,112225-112301,112377-113995,
           114348-114545,114635-115173
          Length = 1166

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 21/73 (28%), Positives = 36/73 (49%)
 Frame = -2

Query: 531 LIPPVQADDISFTALAEHKVINKHGTRRVRENTRKSKILASRSSSIL*DLVFPSSWGLH* 352
           ++PP  A+D S++A+   K   K+G   +     +S++    SSS    L   +SWG   
Sbjct: 331 VLPP-PAEDFSYSAVVAAKHPIKNG---ITNTANQSRLSPPNSSSGRSTLPPAASWGHRD 386

Query: 351 MTTRILAAHLTNS 313
           + TR  A  + +S
Sbjct: 387 LNTRTTATGVASS 399


>02_05_1022 +
           33570664-33570976,33572206-33573440,33573873-33574013,
           33574242-33574796,33574914-33575015
          Length = 781

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 18/62 (29%), Positives = 32/62 (51%), Gaps = 2/62 (3%)
 Frame = +2

Query: 242 RPELQLQVFRLGLSQDI--RQRRGIAEFVKCAAKILVVI*CSPQDDGKTRSQRILEDLDA 415
           R +L+L    L L      +  RGI E VKC+ + L+ + C       T + R+++ +DA
Sbjct: 571 REQLKLGAVHLSLEASTFSKNSRGI-ELVKCSERCLICLVCEDSIVLHTWAYRVVKLVDA 629

Query: 416 KI 421
           ++
Sbjct: 630 RL 631


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,997,870
Number of Sequences: 37544
Number of extensions: 297279
Number of successful extensions: 688
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 672
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 688
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1423789920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)