Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0289.Seq
         (598 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_51468| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.2  
SB_23226| Best HMM Match : Herpes_UL43 (HMM E-Value=1.9)               29   2.2  
SB_50766| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.9  
SB_34777| Best HMM Match : VWA (HMM E-Value=0)                         29   2.9  
SB_39313| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.6  
SB_57302| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.7  
SB_52576| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.7  
SB_25826| Best HMM Match : Ank (HMM E-Value=6.7e-37)                   27   8.7  

>SB_51468| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1626

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 15/32 (46%), Positives = 19/32 (59%)
 Frame = -1

Query: 223 HVIMYLKLKGSCKRGCRARLHLRQALFLLDSR 128
           HVI YLK  G+CK G    L++  A F  D+R
Sbjct: 45  HVIEYLKKDGTCKCGLECPLYVHHA-FNFDTR 75


>SB_23226| Best HMM Match : Herpes_UL43 (HMM E-Value=1.9)
          Length = 749

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 15/32 (46%), Positives = 19/32 (59%)
 Frame = -1

Query: 223 HVIMYLKLKGSCKRGCRARLHLRQALFLLDSR 128
           HVI YLK  G+CK G    L++  A F  D+R
Sbjct: 45  HVIEYLKKDGTCKCGLECPLYVHHA-FNFDTR 75


>SB_50766| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 479

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 15/51 (29%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
 Frame = -1

Query: 568 TLTFISHGXK-LATHTARTSRRHFIHSTSGTQSNKQAWYSEGAGKYAEIEN 419
           TLT I +  K  +++ A+T   HFI + +G + + + WY     +Y ++ N
Sbjct: 164 TLTDIGNFRKSCSSNVAQTVLVHFIFNDNGAEESLKKWYGISDERYQKVIN 214


>SB_34777| Best HMM Match : VWA (HMM E-Value=0)
          Length = 1268

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 22/75 (29%), Positives = 33/75 (44%)
 Frame = -1

Query: 397  YSLRPGLSVVLGTALNDNKDLSGAFNKLRDPATLAYILTQTESKYLKLQFRSNFR*EIHV 218
            Y   P L + LG+  N +K L  A +K++ P T        E   L L    N R ++  
Sbjct: 1125 YGSEPSLEIPLGSH-NTSKGLLKALSKIKYPGTATKTGKALEYARLNLFGSRNARRKVPK 1183

Query: 217  IMYLKLKGSCKRGCR 173
            I+ +  KGS +   R
Sbjct: 1184 ILVVLTKGSSRDDIR 1198


>SB_39313| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 185

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
 Frame = -1

Query: 550 HGXKLATHTARTSR--RHFIHSTSGTQSNKQAWYSEGAGKYAEIENLG 413
           HG    +H+   SR  +H  H  +G +   + WY E   K  EI+N+G
Sbjct: 128 HGSNEHSHSIVLSRNLKHPYHLRAGAEL--RVWYGEALFKLFEIDNVG 173


>SB_57302| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 157

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = +1

Query: 103 NESWCIELVENQEEIGLVED 162
           +E WC+ L+EN+ EIG+  D
Sbjct: 88  DEEWCMLLLENEVEIGISID 107


>SB_52576| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1649

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 11/24 (45%), Positives = 18/24 (75%)
 Frame = +1

Query: 142 EIGLVEDEVWLGNHACSFLLISGT 213
           ++ +V D+VW  NHA +F ++SGT
Sbjct: 314 DVLVVLDDVWDVNHAAAFDVLSGT 337


>SB_25826| Best HMM Match : Ank (HMM E-Value=6.7e-37)
          Length = 1041

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 8/11 (72%), Positives = 10/11 (90%)
 Frame = +1

Query: 340 PCCHLMQSPRR 372
           PCCHLMQ P++
Sbjct: 408 PCCHLMQDPKK 418


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,275,964
Number of Sequences: 59808
Number of extensions: 342067
Number of successful extensions: 905
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 859
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 905
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1439498375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)