Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0289.Seq
         (598 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U50301-7|AAB37055.1|  366|Caenorhabditis elegans Serpin protein ...    31   0.47 
AY525083-1|AAS13531.1|  366|Caenorhabditis elegans serine or cys...    31   0.47 
Z81522-9|CAB61005.2| 3674|Caenorhabditis elegans Hypothetical pr...    29   3.3  
Z81063-9|CAB61012.2| 3674|Caenorhabditis elegans Hypothetical pr...    29   3.3  
AJ012469-1|CAA10033.1| 3674|Caenorhabditis elegans DYS-1 protein...    29   3.3  
U29379-7|ABC71826.1|  710|Caenorhabditis elegans Patterned expre...    28   5.8  
U29379-6|AAF99981.3|  677|Caenorhabditis elegans Patterned expre...    28   5.8  
U29379-5|ABC71825.1|  777|Caenorhabditis elegans Patterned expre...    28   5.8  
U28740-2|AAM51506.2|  417|Caenorhabditis elegans Hypothetical pr...    27   7.7  
U28740-1|AAA68317.3|  434|Caenorhabditis elegans Hypothetical pr...    27   7.7  

>U50301-7|AAB37055.1|  366|Caenorhabditis elegans Serpin protein 7,
           isoform a protein.
          Length = 366

 Score = 31.5 bits (68), Expect = 0.47
 Identities = 16/35 (45%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
 Frame = -2

Query: 198 KEAASVVAEP-DFIFDKPYFFLILDQFNTPAFIGI 97
           K A  V+ EP DF  D P+FF +L + N P F+G+
Sbjct: 331 KSAMFVMEEPKDFTADHPFFF-VLSKDNHPLFVGL 364


>AY525083-1|AAS13531.1|  366|Caenorhabditis elegans serine or
           cysteine protease inhibitorprotein.
          Length = 366

 Score = 31.5 bits (68), Expect = 0.47
 Identities = 16/35 (45%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
 Frame = -2

Query: 198 KEAASVVAEP-DFIFDKPYFFLILDQFNTPAFIGI 97
           K A  V+ EP DF  D P+FF +L + N P F+G+
Sbjct: 331 KSAMFVMEEPKDFTADHPFFF-VLSKDNHPLFVGL 364


>Z81522-9|CAB61005.2| 3674|Caenorhabditis elegans Hypothetical
           protein F15D3.1a protein.
          Length = 3674

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 21/72 (29%), Positives = 38/72 (52%), Gaps = 1/72 (1%)
 Frame = +1

Query: 94  NNANESWCIELVENQEEIGLVE-DEVWLGNHACSFLLISGT*SRESLNGNSTGTAASSI* 270
           + A + WCIE++++ EEI + +    +   HA ++L+ S    R+ +  N T TA  S  
Sbjct: 132 SEAIKQWCIEVMKSYEEIDVYDFTSSFRDGHAFNYLIHSY--DRKLI--NLTKTAEMSAI 187

Query: 271 TRFESRYTPASR 306
            R E+ +  A +
Sbjct: 188 DRIENAFAVAEK 199


>Z81063-9|CAB61012.2| 3674|Caenorhabditis elegans Hypothetical
           protein F15D3.1a protein.
          Length = 3674

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 21/72 (29%), Positives = 38/72 (52%), Gaps = 1/72 (1%)
 Frame = +1

Query: 94  NNANESWCIELVENQEEIGLVE-DEVWLGNHACSFLLISGT*SRESLNGNSTGTAASSI* 270
           + A + WCIE++++ EEI + +    +   HA ++L+ S    R+ +  N T TA  S  
Sbjct: 132 SEAIKQWCIEVMKSYEEIDVYDFTSSFRDGHAFNYLIHSY--DRKLI--NLTKTAEMSAI 187

Query: 271 TRFESRYTPASR 306
            R E+ +  A +
Sbjct: 188 DRIENAFAVAEK 199


>AJ012469-1|CAA10033.1| 3674|Caenorhabditis elegans DYS-1 protein
           protein.
          Length = 3674

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 21/72 (29%), Positives = 38/72 (52%), Gaps = 1/72 (1%)
 Frame = +1

Query: 94  NNANESWCIELVENQEEIGLVE-DEVWLGNHACSFLLISGT*SRESLNGNSTGTAASSI* 270
           + A + WCIE++++ EEI + +    +   HA ++L+ S    R+ +  N T TA  S  
Sbjct: 132 SEAIKQWCIEVMKSYEEIDVYDFTSSFRDGHAFNYLIHSY--DRKLI--NLTKTAEMSAI 187

Query: 271 TRFESRYTPASR 306
            R E+ +  A +
Sbjct: 188 DRIENAFAVAEK 199


>U29379-7|ABC71826.1|  710|Caenorhabditis elegans Patterned
           expression site protein22, isoform c protein.
          Length = 710

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = -1

Query: 553 SHGXKLATHTARTSRRHFIHSTSGTQ 476
           S   K+ +HTA  SR+H + S SG+Q
Sbjct: 331 SDAHKVRSHTATRSRKHTMTSNSGSQ 356


>U29379-6|AAF99981.3|  677|Caenorhabditis elegans Patterned
           expression site protein22, isoform a protein.
          Length = 677

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = -1

Query: 553 SHGXKLATHTARTSRRHFIHSTSGTQ 476
           S   K+ +HTA  SR+H + S SG+Q
Sbjct: 276 SDAHKVRSHTATRSRKHTMTSNSGSQ 301


>U29379-5|ABC71825.1|  777|Caenorhabditis elegans Patterned
           expression site protein22, isoform b protein.
          Length = 777

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = -1

Query: 553 SHGXKLATHTARTSRRHFIHSTSGTQ 476
           S   K+ +HTA  SR+H + S SG+Q
Sbjct: 331 SDAHKVRSHTATRSRKHTMTSNSGSQ 356


>U28740-2|AAM51506.2|  417|Caenorhabditis elegans Hypothetical
           protein B0563.6b protein.
          Length = 417

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 22/61 (36%), Positives = 31/61 (50%), Gaps = 12/61 (19%)
 Frame = -1

Query: 148 LFLLDSRPIQYTSFHWHYYD---------LSIKIIIKMNDEIV---RLRFKMF*LLFNKN 5
           ++ +D  PI YT+F+W  Y          L I I+  +N +I+   R R KMF  L NK 
Sbjct: 175 IYSMDDHPI-YTTFYWQIYKWTREAILRFLPIIILTVLNIQIMIAFRKRQKMFQQLTNKR 233

Query: 4   K 2
           K
Sbjct: 234 K 234


>U28740-1|AAA68317.3|  434|Caenorhabditis elegans Hypothetical
           protein B0563.6a protein.
          Length = 434

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 22/61 (36%), Positives = 31/61 (50%), Gaps = 12/61 (19%)
 Frame = -1

Query: 148 LFLLDSRPIQYTSFHWHYYD---------LSIKIIIKMNDEIV---RLRFKMF*LLFNKN 5
           ++ +D  PI YT+F+W  Y          L I I+  +N +I+   R R KMF  L NK 
Sbjct: 184 IYSMDDHPI-YTTFYWQIYKWTREAILRFLPIIILTVLNIQIMIAFRKRQKMFQQLTNKR 242

Query: 4   K 2
           K
Sbjct: 243 K 243


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,892,671
Number of Sequences: 27780
Number of extensions: 257384
Number of successful extensions: 618
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 603
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 618
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1268802960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)