Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0289.Seq
         (598 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    23   2.3  
AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor 1-a...    22   5.3  
AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...    22   5.3  
X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...    21   6.9  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                21   6.9  
U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    21   9.2  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    21   9.2  
AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    21   9.2  
AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.     21   9.2  

>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = -2

Query: 162 IFDKPYFFLILDQFNTPAFIGII 94
           + +K  + +ILD  +  AFIGI+
Sbjct: 461 VLEKEPYVIILDDEHDDAFIGIV 483


>AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor
           1-alpha protein.
          Length = 274

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = +2

Query: 371 DGKTRSQRILEDLDAKIFDFRVFSRTLRVP 460
           +GK   + ++E LDA +   R   + LR+P
Sbjct: 163 EGKVEGKCLIEALDAILPPTRPTDKALRLP 192


>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = +2

Query: 371 DGKTRSQRILEDLDAKIFDFRVFSRTLRVP 460
           +GK   + ++E LDA +   R   + LR+P
Sbjct: 220 EGKVEGKCLIEALDAILPPTRPTDKALRLP 249


>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score = 21.4 bits (43), Expect = 6.9
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = +2

Query: 371 DGKTRSQRILEDLDAKIFDFRVFSRTLRVP 460
           DG    + ++E LDA +   R   + LR+P
Sbjct: 220 DGNADGKTLIEALDAILPPSRPTDKALRLP 249


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 21.4 bits (43), Expect = 6.9
 Identities = 8/27 (29%), Positives = 13/27 (48%)
 Frame = -3

Query: 557 YFPWXQASDSYRPYKQTTFHSQH*RNT 477
           Y P       Y P++ ++ H QH  +T
Sbjct: 316 YHPHQHHPSQYHPHRGSSPHHQHGNHT 342


>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 9/28 (32%), Positives = 15/28 (53%)
 Frame = +2

Query: 395 ILEDLDAKIFDFRVFSRTLRVPCLFITL 478
           + +D D K+F   +F     +P +FI L
Sbjct: 211 LTDDEDTKVFVTCIFIWAYVIPLIFIIL 238


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 9/28 (32%), Positives = 15/28 (53%)
 Frame = +2

Query: 395 ILEDLDAKIFDFRVFSRTLRVPCLFITL 478
           + +D D K+F   +F     +P +FI L
Sbjct: 211 LTDDEDTKVFVTCIFIWAYVIPLIFIIL 238


>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 11/30 (36%), Positives = 15/30 (50%)
 Frame = +2

Query: 236 EIRPELQLQVFRLGLSQDIRQRRGIAEFVK 325
           EI   L+  +FR   S+    R G+A F K
Sbjct: 264 EIEDNLETSLFRPLSSEATDLRMGVASFCK 293


>AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.
          Length = 388

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = +2

Query: 392 RILEDLDAKIFDFRV 436
           R LED D ++F+F +
Sbjct: 300 RELEDFDGRLFEFPI 314


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 159,107
Number of Sequences: 438
Number of extensions: 3087
Number of successful extensions: 10
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17482179
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)