Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0289.Seq
         (598 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g12010.1 68417.m01911 disease resistance protein (TIR-NBS-LRR...    42   2e-04
At1g19220.1 68414.m02392 transcriptional factor B3 family protei...    29   1.8  
At5g27420.1 68418.m03273 zinc finger (C3HC4-type RING finger) fa...    27   7.2  
At4g39960.1 68417.m05660 DNAJ heat shock family protein similar ...    27   7.2  
At2g20240.1 68415.m02365 expressed protein                             27   7.2  
At2g11270.1 68415.m01208 citrate synthase-related contains simil...    27   9.5  
At1g51290.1 68414.m05768 F-box family protein (FBX10) contains P...    27   9.5  

>At4g12010.1 68417.m01911 disease resistance protein (TIR-NBS-LRR
           class), putative domain signature TIR-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 1219

 Score = 42.3 bits (95), Expect = 2e-04
 Identities = 34/118 (28%), Positives = 55/118 (46%), Gaps = 3/118 (2%)
 Frame = -1

Query: 430 EIENLGIKVFQYSLRPGLSVVLGTALNDNKDLSGAFNKLRDPATLAYILTQTESKYLKLQ 251
           ++E +GI+  ++  R G        L D++D+     +      +  I   T SK   ++
Sbjct: 497 KVETIGIRDCRWLSRHGNQCQWHIRLWDSEDICDLLTEGLGTDKIRGIFLDT-SKLRAMR 555

Query: 250 FRSNFR*EIHVIMYLKLKGS-CKRGCRA--RLHLRQALFLLDSRPIQYTSFHWHYYDL 86
             +     ++ + YLK+  S C RGC A  +LHLR+ L  L   P + T  HWH Y L
Sbjct: 556 LSAKAFQGMYNLKYLKIYDSHCSRGCEAEFKLHLRRGLSFL---PNELTYLHWHGYPL 610


>At1g19220.1 68414.m02392 transcriptional factor B3 family protein /
           auxin-responsive factor AUX/IAA-related contains Pfam
           profile: PF02309 AUX/IAA family
          Length = 1086

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 14/33 (42%), Positives = 21/33 (63%)
 Frame = -1

Query: 424 ENLGIKVFQYSLRPGLSVVLGTALNDNKDLSGA 326
           E+ G+K  Q S+ PGLS+V   ++  N  LSG+
Sbjct: 399 EDFGMKDAQSSMFPGLSLVQWMSMQQNNPLSGS 431


>At5g27420.1 68418.m03273 zinc finger (C3HC4-type RING finger)
           family protein similar to RING-H2 zinc finger protein
           ATL6 [Arabidopsis thaliana]
           gi|4928403|gb|AAD33584.1|AF132016_1[4928403]; contains
           Pfam domain, PF00097: Zinc finger, C3HC4 type (RING
           finger)
          Length = 368

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = -3

Query: 464 SMVLGGCGKIRGNRKSWHQGLPVFFETWSFRR 369
           S+ LGG G +RGN  +   G  V  + W+F R
Sbjct: 290 SIRLGGTGSVRGNSVTSPSGDSVRADRWAFLR 321


>At4g39960.1 68417.m05660 DNAJ heat shock family protein similar to
           SP|Q9S5A3 Chaperone protein dnaJ {Listeria
           monocytogenes}; contains Pfam profiles PF00226 DnaJ
           domain, PF01556 DnaJ C terminal region, PF00684 DnaJ
           central domain (4 repeats)
          Length = 447

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = +3

Query: 399 WKTLMPRFSISAYFPAPSEYH 461
           W  L PRF++ A++P+  E H
Sbjct: 14  WGILRPRFAVKAFYPSRLESH 34


>At2g20240.1 68415.m02365 expressed protein 
          Length = 713

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 19/63 (30%), Positives = 32/63 (50%), Gaps = 3/63 (4%)
 Frame = -2

Query: 486 AEHKVINKHGTRRVRENTR---KSKILASRSSSIL*DLVFPSSWGLH*MTTRILAAHLTN 316
           AE + + K  TR++RE      +++ L+S SSS+L +        L+      L  ++TN
Sbjct: 240 AETREVAKEITRQIRETVEGHCRNETLSSSSSSVLSNGYMGDDCSLNRSNYEYLVGNITN 299

Query: 315 SAI 307
           S I
Sbjct: 300 SEI 302


>At2g11270.1 68415.m01208 citrate synthase-related contains
           similarity to Swiss-Prot:P20115 citrate synthase,
           mitochondrial precursor [Arabidopsis thaliana]
          Length = 83

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = -1

Query: 175 RARLHLRQALFLLDSRPIQYTSFHWHYYDLSIKIIIK 65
           R R H+   LF L SR   YT+  +++ D S K+ +K
Sbjct: 16  RGRFHVVIKLFSLYSRETSYTNTTFNFQDRSKKLKLK 52


>At1g51290.1 68414.m05768 F-box family protein (FBX10) contains Pfam
           F-box domain PF:00646; similar to F-box protein family,
           AtFBX9 (GP:20197985) {Arabidopsis thaliana}
          Length = 377

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = +1

Query: 112 WCIELVENQEEIGLVEDEVWL 174
           W  +   N  EIGLVED VW+
Sbjct: 259 WLTKNSINNREIGLVEDVVWI 279


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,122,885
Number of Sequences: 28952
Number of extensions: 241000
Number of successful extensions: 657
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 644
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 657
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1190791976
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)