Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0288.Seq
         (479 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_P07856 Cluster: Sericin 1 precursor; n=4; Bombyx mori|R...    86   3e-16
UniRef50_Q0RP69 Cluster: Putative uncharacterized protein; n=1; ...    37   0.20 
UniRef50_Q2QR25 Cluster: Protease inhibitor/seed storage/LTP fam...    32   5.8  
UniRef50_Q19ZL3 Cluster: Gp54; n=2; unclassified Siphoviridae|Re...    32   5.8  
UniRef50_Q17641 Cluster: Putative uncharacterized protein; n=11;...    32   5.8  

>UniRef50_P07856 Cluster: Sericin 1 precursor; n=4; Bombyx mori|Rep:
            Sericin 1 precursor - Bombyx mori (Silk moth)
          Length = 1186

 Score = 86.2 bits (204), Expect = 3e-16
 Identities = 39/50 (78%), Positives = 40/50 (80%)
 Frame = +3

Query: 330  GRFKSSDAXYTXXSVSRSHXXGVNRLLHKPGHGKICLCFENIFDIPYHLR 479
            G   +SDA  T  SVSRSH  GVNRLLHKPG GKICLCFENIFDIPYHLR
Sbjct: 1132 GGSSTSDASSTSSSVSRSHHSGVNRLLHKPGQGKICLCFENIFDIPYHLR 1181



 Score = 48.4 bits (110), Expect = 8e-05
 Identities = 17/17 (100%), Positives = 17/17 (100%)
 Frame = +2

Query: 161  EDGFWWWNRRKSGSGHK 211
            EDGFWWWNRRKSGSGHK
Sbjct: 1075 EDGFWWWNRRKSGSGHK 1091


>UniRef50_Q0RP69 Cluster: Putative uncharacterized protein; n=1;
           Frankia alni ACN14a|Rep: Putative uncharacterized
           protein - Frankia alni (strain ACN14a)
          Length = 413

 Score = 37.1 bits (82), Expect = 0.20
 Identities = 20/53 (37%), Positives = 26/53 (49%), Gaps = 3/53 (5%)
 Frame = +3

Query: 81  HXPTV---PAQXEELLPAQRQPPKATPRHLKTXSGGGIEGNQDPVTKALPYSH 230
           H PT    PA  +    AQR+P +A P  L+   G  +    DP T+ALP  H
Sbjct: 352 HAPTPSPSPATADAAAAAQRRPRRAMPPILEIVDGAVVNDGSDPPTRALPRRH 404


>UniRef50_Q2QR25 Cluster: Protease inhibitor/seed storage/LTP family
           protein; n=3; Oryza sativa|Rep: Protease inhibitor/seed
           storage/LTP family protein - Oryza sativa subsp.
           japonica (Rice)
          Length = 215

 Score = 32.3 bits (70), Expect = 5.8
 Identities = 18/58 (31%), Positives = 25/58 (43%)
 Frame = +3

Query: 6   PRKNPPRXXVAALKXXVPVAMMEA*HXPTVPAQXEELLPAQRQPPKATPRHLKTXSGG 179
           PR+NPPR   +  +   P   +E    P +      ++ A  QPP   P    T SGG
Sbjct: 74  PRRNPPRAPPSPRRASPPSVSVEPTPAPVIAPSPPPVV-APSQPPTIAPTQPPTPSGG 130


>UniRef50_Q19ZL3 Cluster: Gp54; n=2; unclassified Siphoviridae|Rep:
           Gp54 - Mycobacterium phage Orion
          Length = 123

 Score = 32.3 bits (70), Expect = 5.8
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = -2

Query: 343 DLNRPRXXNCLKWLCLPRTCLXWNRCCWHC 254
           +L+RPR  NC+   C    C   +R C HC
Sbjct: 40  ELHRPRWSNCINACCSGEDCRLRDRVCEHC 69


>UniRef50_Q17641 Cluster: Putative uncharacterized protein; n=11;
           Caenorhabditis|Rep: Putative uncharacterized protein -
           Caenorhabditis elegans
          Length = 197

 Score = 32.3 bits (70), Expect = 5.8
 Identities = 12/33 (36%), Positives = 13/33 (39%)
 Frame = -2

Query: 328 RXXNCLKWLCLPRTCLXWNRCCWHCGARLIGCG 230
           R   C +  C  R C     CC  CG    GCG
Sbjct: 99  RCCTCCRTCCCTRCCTCCRPCCCGCGCGCCGCG 131


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 331,964,916
Number of Sequences: 1657284
Number of extensions: 4703312
Number of successful extensions: 11095
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 10761
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11079
length of database: 575,637,011
effective HSP length: 94
effective length of database: 419,852,315
effective search space used: 27290400475
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)