Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0288.Seq
         (479 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc fin...    22   3.4  
AM292377-1|CAL23189.2|  358|Tribolium castaneum gustatory recept...    22   3.4  
AM292342-1|CAL23154.2|  386|Tribolium castaneum gustatory recept...    22   3.4  

>AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc finger
           protein protein.
          Length = 456

 Score = 21.8 bits (44), Expect = 3.4
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = +3

Query: 153 RHLKTXSGGGIEGNQD 200
           +H+KT +G G +G+ D
Sbjct: 392 KHVKTHNGNGKKGSSD 407


>AM292377-1|CAL23189.2|  358|Tribolium castaneum gustatory receptor
           candidate 56 protein.
          Length = 358

 Score = 21.8 bits (44), Expect = 3.4
 Identities = 7/19 (36%), Positives = 12/19 (63%)
 Frame = +1

Query: 412 TSLVMEKYAFASKTYSIFL 468
           T +    Y + +KTYS+F+
Sbjct: 161 TIIFFASYQYGTKTYSLFI 179


>AM292342-1|CAL23154.2|  386|Tribolium castaneum gustatory receptor
           candidate 21 protein.
          Length = 386

 Score = 21.8 bits (44), Expect = 3.4
 Identities = 7/19 (36%), Positives = 12/19 (63%)
 Frame = +1

Query: 412 TSLVMEKYAFASKTYSIFL 468
           T +    Y + +KTYS+F+
Sbjct: 161 TIIFFASYQYGTKTYSLFI 179


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 79,717
Number of Sequences: 336
Number of extensions: 1273
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 52
effective length of database: 105,113
effective search space used: 11247091
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)