Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0288.Seq
         (479 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0305 - 17235832-17236379,17237345-17237444                       32   0.21 
12_02_0304 + 17112677-17113195                                         27   6.0  
11_06_0150 - 20640535-20640600,20641299-20641451,20641567-20641830     27   6.0  
03_05_0032 + 20043252-20044361                                         27   6.0  
12_02_0585 + 20824752-20825954,20826141-20826329,20826533-208266...    27   7.9  
11_06_0453 + 23781803-23781814,23782700-23782781,23783334-23784160     27   7.9  
04_03_0716 + 18995712-18995904,18996511-18996614,18997280-189973...    27   7.9  

>12_02_0305 - 17235832-17236379,17237345-17237444
          Length = 215

 Score = 32.3 bits (70), Expect = 0.21
 Identities = 18/58 (31%), Positives = 25/58 (43%)
 Frame = +3

Query: 6   PRKNPPRXXVAALKXXVPVAMMEA*HXPTVPAQXEELLPAQRQPPKATPRHLKTXSGG 179
           PR+NPPR   +  +   P   +E    P +      ++ A  QPP   P    T SGG
Sbjct: 74  PRRNPPRAPPSPRRASPPSVSVEPTPAPVIAPSPPPVV-APSQPPTIAPTQPPTPSGG 130


>12_02_0304 + 17112677-17113195
          Length = 172

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 17/58 (29%), Positives = 23/58 (39%)
 Frame = +3

Query: 6   PRKNPPRXXVAALKXXVPVAMMEA*HXPTVPAQXEELLPAQRQPPKATPRHLKTXSGG 179
           PR+NPPR   +  +   P    E    P +      ++ A  QP    P    T SGG
Sbjct: 31  PRRNPPRAPPSPRRAPSPSVTAEPTPAPVIAPSPPPVV-APSQPLVVAPTQPPTPSGG 87


>11_06_0150 - 20640535-20640600,20641299-20641451,20641567-20641830
          Length = 160

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = +3

Query: 135 PPKATPRHLKTXSGGGIEGN 194
           PP  TP HL+   GG + GN
Sbjct: 19  PPTPTPTHLRRGDGGYVPGN 38


>03_05_0032 + 20043252-20044361
          Length = 369

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = +3

Query: 138 PKATPRHLKTXSGGGIEGNQDPVTKALPY 224
           P   P+HL   SGG I G +D +  A P+
Sbjct: 133 PVVGPQHLMQASGGCITGPEDALLTACPW 161


>12_02_0585 +
           20824752-20825954,20826141-20826329,20826533-20826690,
           20826913-20827009,20827368-20827730,20829225-20829303,
           20830180-20830286
          Length = 731

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 13/43 (30%), Positives = 18/43 (41%)
 Frame = -2

Query: 379 LETLXXV*XASDDLNRPRXXNCLKWLCLPRTCLXWNRCCWHCG 251
           LE +      S +  R R  N   +LC+P     W  C W+ G
Sbjct: 604 LEKMIVALHESYEETRERTNNMEAYLCIPSCGGRWTPCAWNGG 646


>11_06_0453 + 23781803-23781814,23782700-23782781,23783334-23784160
          Length = 306

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 15/43 (34%), Positives = 20/43 (46%), Gaps = 2/43 (4%)
 Frame = -2

Query: 295 PRTCLXWNRCCWHC--GARLIGCG*LYGSAFVTGS*FPSIPPP 173
           P +C     C   C  G R  GCG +YG +  +    P +PPP
Sbjct: 230 PPSCCAPPPCYQGCYEGCRCGGCGRVYGYSVPSARPPPLLPPP 272


>04_03_0716 +
           18995712-18995904,18996511-18996614,18997280-18997393,
           18997819-18997824,18998041-18998097
          Length = 157

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
 Frame = +3

Query: 123 AQRQPPKATPRHLKTXSGGGIEGN--QDPVTKAL 218
           A R+ P+   RHL+  SGGG  G   Q+ V +A+
Sbjct: 30  AGRRAPRRRSRHLRCCSGGGDPGQPPQEAVLEAI 63


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,689,057
Number of Sequences: 37544
Number of extensions: 148123
Number of successful extensions: 389
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 378
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 388
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 991020332
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)