Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0288.Seq
         (479 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_56182| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.0  
SB_33729| Best HMM Match : SAM_1 (HMM E-Value=0.00081)                 27   8.0  

>SB_56182| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 525

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = +3

Query: 405 LLHKPGHGKICLCFENIFDIPYHLR 479
           LL  P  GKI  CF NI   P H++
Sbjct: 279 LLESPSFGKIIECFRNILASPGHIK 303


>SB_33729| Best HMM Match : SAM_1 (HMM E-Value=0.00081)
          Length = 196

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = -3

Query: 468 KEYRICFRSKGIFFHDQACVKVC 400
           KE+ +CF +K ++  DQ   K+C
Sbjct: 142 KEWTLCFEAKEMYLEDQNKAKLC 164


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,626,971
Number of Sequences: 59808
Number of extensions: 155964
Number of successful extensions: 363
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 321
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 363
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1001731762
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)