Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0288.Seq
(479 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U55854-6|AAK68161.1| 197|Caenorhabditis elegans Hypothetical pr... 32 0.19
AL033514-14|CAA22101.2| 1420|Caenorhabditis elegans Hypothetical... 29 2.3
Z66499-4|CAA91301.1| 164|Caenorhabditis elegans Hypothetical pr... 28 4.0
U58760-7|AAK31463.1| 188|Caenorhabditis elegans Hypothetical pr... 28 4.0
U55854-7|AAK68158.1| 166|Caenorhabditis elegans Hypothetical pr... 28 4.0
Z81579-4|CAE17915.1| 212|Caenorhabditis elegans Hypothetical pr... 27 5.3
Z75952-5|CAB00093.2| 149|Caenorhabditis elegans Hypothetical pr... 27 5.3
Z49886-6|CAI79131.1| 149|Caenorhabditis elegans Hypothetical pr... 27 7.0
Z49886-5|CAA90055.1| 152|Caenorhabditis elegans Hypothetical pr... 27 7.0
>U55854-6|AAK68161.1| 197|Caenorhabditis elegans Hypothetical
protein C04G6.7 protein.
Length = 197
Score = 32.3 bits (70), Expect = 0.19
Identities = 12/33 (36%), Positives = 13/33 (39%)
Frame = -2
Query: 328 RXXNCLKWLCLPRTCLXWNRCCWHCGARLIGCG 230
R C + C R C CC CG GCG
Sbjct: 99 RCCTCCRTCCCTRCCTCCRPCCCGCGCGCCGCG 131
Score = 27.5 bits (58), Expect = 5.3
Identities = 15/36 (41%), Positives = 16/36 (44%), Gaps = 1/36 (2%)
Frame = -2
Query: 334 RPRXXNCLKWLC-LPRTCLXWNRCCWHCGARLIGCG 230
RPR C + C RTC RCC C GCG
Sbjct: 90 RPRCCCCCRRCCTCCRTCCC-TRCCTCCRPCCCGCG 124
>AL033514-14|CAA22101.2| 1420|Caenorhabditis elegans Hypothetical
protein Y75B8A.13 protein.
Length = 1420
Score = 28.7 bits (61), Expect = 2.3
Identities = 14/42 (33%), Positives = 20/42 (47%)
Frame = +3
Query: 90 TVPAQXEELLPAQRQPPKATPRHLKTXSGGGIEGNQDPVTKA 215
T P Q EEL + P+A+P+ +T IE D +A
Sbjct: 506 TAPPQEEELFDDALEDPEASPKSPETVDAAPIEEGSDAAPEA 547
>Z66499-4|CAA91301.1| 164|Caenorhabditis elegans Hypothetical
protein T01B7.8 protein.
Length = 164
Score = 27.9 bits (59), Expect = 4.0
Identities = 12/33 (36%), Positives = 13/33 (39%)
Frame = -2
Query: 328 RXXNCLKWLCLPRTCLXWNRCCWHCGARLIGCG 230
R C + C R C CC CG GCG
Sbjct: 97 RCCTCCRTCCCTRCCTCCRPCCCGCGC---GCG 126
Score = 27.5 bits (58), Expect = 5.3
Identities = 15/36 (41%), Positives = 16/36 (44%), Gaps = 1/36 (2%)
Frame = -2
Query: 334 RPRXXNCLKWLC-LPRTCLXWNRCCWHCGARLIGCG 230
RPR C + C RTC RCC C GCG
Sbjct: 88 RPRCCCCCRRCCTCCRTCCC-TRCCTCCRPCCCGCG 122
>U58760-7|AAK31463.1| 188|Caenorhabditis elegans Hypothetical
protein C27A2.5 protein.
Length = 188
Score = 27.9 bits (59), Expect = 4.0
Identities = 12/33 (36%), Positives = 13/33 (39%)
Frame = -2
Query: 328 RXXNCLKWLCLPRTCLXWNRCCWHCGARLIGCG 230
R C + C R C CC CG GCG
Sbjct: 98 RCCTCCRTCCCTRCCTCCRPCCCGCGC---GCG 127
>U55854-7|AAK68158.1| 166|Caenorhabditis elegans Hypothetical
protein C04G6.10 protein.
Length = 166
Score = 27.9 bits (59), Expect = 4.0
Identities = 12/33 (36%), Positives = 13/33 (39%)
Frame = -2
Query: 328 RXXNCLKWLCLPRTCLXWNRCCWHCGARLIGCG 230
R C + C R C CC CG GCG
Sbjct: 98 RCCTCCRTCCCTRCCTCCRPCCCGCGC---GCG 127
Score = 27.5 bits (58), Expect = 5.3
Identities = 15/36 (41%), Positives = 16/36 (44%), Gaps = 1/36 (2%)
Frame = -2
Query: 334 RPRXXNCLKWLC-LPRTCLXWNRCCWHCGARLIGCG 230
RPR C + C RTC RCC C GCG
Sbjct: 89 RPRCCCCCRRCCTCCRTCCC-TRCCTCCRPCCCGCG 123
>Z81579-4|CAE17915.1| 212|Caenorhabditis elegans Hypothetical
protein R13H4.8 protein.
Length = 212
Score = 27.5 bits (58), Expect = 5.3
Identities = 15/36 (41%), Positives = 16/36 (44%), Gaps = 1/36 (2%)
Frame = -2
Query: 334 RPRXXNCLKWLC-LPRTCLXWNRCCWHCGARLIGCG 230
RPR C + C RTC RCC C GCG
Sbjct: 90 RPRCCCCCRRCCTCCRTCCC-TRCCTCCRPCCCGCG 124
>Z75952-5|CAB00093.2| 149|Caenorhabditis elegans Hypothetical
protein F29D10.2 protein.
Length = 149
Score = 27.5 bits (58), Expect = 5.3
Identities = 13/36 (36%), Positives = 15/36 (41%), Gaps = 1/36 (2%)
Frame = -2
Query: 334 RPRXX-NCLKWLCLPRTCLXWNRCCWHCGARLIGCG 230
RP+ C + C R C CC CG GCG
Sbjct: 78 RPKCCCTCCRTCCCTRCCTCCRPCCCGCGCG-CGCG 112
>Z49886-6|CAI79131.1| 149|Caenorhabditis elegans Hypothetical
protein C06A1.7 protein.
Length = 149
Score = 27.1 bits (57), Expect = 7.0
Identities = 13/36 (36%), Positives = 15/36 (41%), Gaps = 1/36 (2%)
Frame = -2
Query: 334 RPRXX-NCLKWLCLPRTCLXWNRCCWHCGARLIGCG 230
RP+ C + C R C CC CG GCG
Sbjct: 80 RPKCCCTCCRTCCCTRCCTCCRPCCCGCGC---GCG 112
>Z49886-5|CAA90055.1| 152|Caenorhabditis elegans Hypothetical
protein C06A1.6 protein.
Length = 152
Score = 27.1 bits (57), Expect = 7.0
Identities = 13/36 (36%), Positives = 15/36 (41%), Gaps = 1/36 (2%)
Frame = -2
Query: 334 RPRXX-NCLKWLCLPRTCLXWNRCCWHCGARLIGCG 230
RP+ C + C R C CC CG GCG
Sbjct: 83 RPKCCCTCCRTCCCTRCCTCCRPCCCGCGC---GCG 115
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,647,699
Number of Sequences: 27780
Number of extensions: 110703
Number of successful extensions: 248
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 235
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 247
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 882200194
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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