Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0287.Seq
(548 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U65429-1|AAB48241.1| 450|Caenorhabditis elegans alpha-tubulin M... 144 4e-35
AF003387-1|AAB54263.2| 450|Caenorhabditis elegans Mechanosensor... 144 4e-35
AB017190-1|BAA32600.1| 450|Caenorhabditis elegans Alpha tubulin... 144 4e-35
D21134-1|BAA22203.1| 449|Caenorhabditis elegans alpha-3 tubulin... 142 1e-34
U40420-4|AAA81432.2| 456|Caenorhabditis elegans Tubulin, alpha ... 123 7e-29
Z78062-1|CAB01495.1| 447|Caenorhabditis elegans Hypothetical pr... 121 4e-28
Z99709-10|CAB16856.1| 448|Caenorhabditis elegans Hypothetical p... 120 5e-28
D14965-1|BAA03610.1| 448|Caenorhabditis elegans alpha-2 tubulin... 120 5e-28
Z81070-8|CAB03001.1| 449|Caenorhabditis elegans Hypothetical pr... 119 1e-27
D16439-1|BAA03909.1| 449|Caenorhabditis elegans alpha-1 tubulin... 119 1e-27
Z37092-12|CAA85463.1| 448|Caenorhabditis elegans Hypothetical p... 119 2e-27
AL023832-2|CAA19476.1| 448|Caenorhabditis elegans Hypothetical ... 119 2e-27
Z81523-9|CAB04246.2| 464|Caenorhabditis elegans Hypothetical pr... 110 7e-25
Z81134-1|CAB03447.1| 444|Caenorhabditis elegans Hypothetical pr... 106 1e-23
AB017191-1|BAA32601.1| 435|Caenorhabditis elegans alpha tubulin... 96 2e-20
Z37140-7|CAA85497.2| 452|Caenorhabditis elegans Hypothetical pr... 92 3e-19
Z46240-1|CAA86310.1| 444|Caenorhabditis elegans Hypothetical pr... 67 7e-12
Z92803-10|CAB07246.1| 449|Caenorhabditis elegans Hypothetical p... 64 6e-11
Z77131-2|CAB00853.4| 444|Caenorhabditis elegans Hypothetical pr... 64 6e-11
Z35597-5|CAA84648.1| 450|Caenorhabditis elegans Hypothetical pr... 64 6e-11
X15242-1|CAA33320.1| 441|Caenorhabditis elegans beta-tubulin pr... 64 8e-11
U70844-1|AAB09092.1| 441|Caenorhabditis elegans Mechanosensory ... 64 8e-11
Z78200-11|CAB01587.2| 426|Caenorhabditis elegans Hypothetical p... 55 3e-08
Z78198-13|CAB01575.2| 426|Caenorhabditis elegans Hypothetical p... 55 3e-08
Z22179-11|CAA80164.1| 444|Caenorhabditis elegans Hypothetical p... 40 0.001
AF287259-1|AAG24513.1| 444|Caenorhabditis elegans gamma-tubulin... 40 0.001
AL161712-9|CAC70134.1| 343|Caenorhabditis elegans Hypothetical ... 32 0.31
AY572975-1|AAT77228.1| 580|Caenorhabditis elegans KQT-3 potassi... 28 5.1
AL032648-2|CAA21699.2| 621|Caenorhabditis elegans Hypothetical ... 28 5.1
>U65429-1|AAB48241.1| 450|Caenorhabditis elegans alpha-tubulin
MEC-12 protein.
Length = 450
Score = 144 bits (349), Expect = 4e-35
Identities = 71/137 (51%), Positives = 86/137 (62%)
Frame = +2
Query: 53 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGK 232
MRE IS+H+GQAGVQIGNACWELYCLEHGIQPDGQMP+DK++GG DDSF+TFFSETG+G+
Sbjct: 1 MREVISIHIGQAGVQIGNACWELYCLEHGIQPDGQMPSDKSLGGSDDSFSTFFSETGSGR 60
Query: 233 HVPRAVFAIXXXXXXMRSALAHTDSCFIQNNLLLVRKMRXXXXXXXXXXLEXKS*IWF*D 412
HVPRAV S F L+ ++ + + D
Sbjct: 61 HVPRAVMVDLEPTVIDEIRTGTYRSLFHPEQLITGKEDAANNYARGHYTIGKEIIDLTLD 120
Query: 413 RIRKLADQCXGLXGXLI 463
RIR+LAD C GL G L+
Sbjct: 121 RIRRLADNCTGLQGFLV 137
Score = 103 bits (248), Expect = 6e-23
Identities = 45/51 (88%), Positives = 48/51 (94%)
Frame = +1
Query: 256 DLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGXEIVDLVL 408
DLEPTV+DE+RTGTYR LFHPEQLITGKEDAANNYARGHYTIG EI+DL L
Sbjct: 69 DLEPTVIDEIRTGTYRSLFHPEQLITGKEDAANNYARGHYTIGKEIIDLTL 119
>AF003387-1|AAB54263.2| 450|Caenorhabditis elegans Mechanosensory
abnormality protein12 protein.
Length = 450
Score = 144 bits (349), Expect = 4e-35
Identities = 71/137 (51%), Positives = 86/137 (62%)
Frame = +2
Query: 53 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGK 232
MRE IS+H+GQAGVQIGNACWELYCLEHGIQPDGQMP+DK++GG DDSF+TFFSETG+G+
Sbjct: 1 MREVISIHIGQAGVQIGNACWELYCLEHGIQPDGQMPSDKSLGGSDDSFSTFFSETGSGR 60
Query: 233 HVPRAVFAIXXXXXXMRSALAHTDSCFIQNNLLLVRKMRXXXXXXXXXXLEXKS*IWF*D 412
HVPRAV S F L+ ++ + + D
Sbjct: 61 HVPRAVMVDLEPTVIDEIRTGTYRSLFHPEQLITGKEDAANNYARGHYTIGKEIIDLTLD 120
Query: 413 RIRKLADQCXGLXGXLI 463
RIR+LAD C GL G L+
Sbjct: 121 RIRRLADNCTGLQGFLV 137
Score = 103 bits (248), Expect = 6e-23
Identities = 45/51 (88%), Positives = 48/51 (94%)
Frame = +1
Query: 256 DLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGXEIVDLVL 408
DLEPTV+DE+RTGTYR LFHPEQLITGKEDAANNYARGHYTIG EI+DL L
Sbjct: 69 DLEPTVIDEIRTGTYRSLFHPEQLITGKEDAANNYARGHYTIGKEIIDLTL 119
>AB017190-1|BAA32600.1| 450|Caenorhabditis elegans Alpha tubulin
(tba-3) protein.
Length = 450
Score = 144 bits (349), Expect = 4e-35
Identities = 71/137 (51%), Positives = 86/137 (62%)
Frame = +2
Query: 53 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGK 232
MRE IS+H+GQAGVQIGNACWELYCLEHGIQPDGQMP+DK++GG DDSF+TFFSETG+G+
Sbjct: 1 MREVISIHIGQAGVQIGNACWELYCLEHGIQPDGQMPSDKSLGGSDDSFSTFFSETGSGR 60
Query: 233 HVPRAVFAIXXXXXXMRSALAHTDSCFIQNNLLLVRKMRXXXXXXXXXXLEXKS*IWF*D 412
HVPRAV S F L+ ++ + + D
Sbjct: 61 HVPRAVMVDLEPTVIDEIRTGTYRSLFHPEQLITGKEDAANNYARGHYTIGKEIIDLTLD 120
Query: 413 RIRKLADQCXGLXGXLI 463
RIR+LAD C GL G L+
Sbjct: 121 RIRRLADNCTGLQGFLV 137
Score = 103 bits (248), Expect = 6e-23
Identities = 45/51 (88%), Positives = 48/51 (94%)
Frame = +1
Query: 256 DLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGXEIVDLVL 408
DLEPTV+DE+RTGTYR LFHPEQLITGKEDAANNYARGHYTIG EI+DL L
Sbjct: 69 DLEPTVIDEIRTGTYRSLFHPEQLITGKEDAANNYARGHYTIGKEIIDLTL 119
>D21134-1|BAA22203.1| 449|Caenorhabditis elegans alpha-3 tubulin
protein.
Length = 449
Score = 142 bits (344), Expect = 1e-34
Identities = 70/136 (51%), Positives = 85/136 (62%)
Frame = +2
Query: 56 RECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGKH 235
RE IS+H+GQAGVQIGNACWELYCLEHGIQPDGQMP+DK++GG DDSF+TFFSETG+G+H
Sbjct: 1 REVISIHIGQAGVQIGNACWELYCLEHGIQPDGQMPSDKSLGGSDDSFSTFFSETGSGRH 60
Query: 236 VPRAVFAIXXXXXXMRSALAHTDSCFIQNNLLLVRKMRXXXXXXXXXXLEXKS*IWF*DR 415
VPRAV S F L+ ++ + + DR
Sbjct: 61 VPRAVMVDLEPTVIDEIRTGTYRSLFHPEQLITGKEDAANNYARGHYTIGKEIIDLTLDR 120
Query: 416 IRKLADQCXGLXGXLI 463
IR+LAD C GL G L+
Sbjct: 121 IRRLADNCTGLQGFLV 136
Score = 103 bits (248), Expect = 6e-23
Identities = 45/51 (88%), Positives = 48/51 (94%)
Frame = +1
Query: 256 DLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGXEIVDLVL 408
DLEPTV+DE+RTGTYR LFHPEQLITGKEDAANNYARGHYTIG EI+DL L
Sbjct: 68 DLEPTVIDEIRTGTYRSLFHPEQLITGKEDAANNYARGHYTIGKEIIDLTL 118
>U40420-4|AAA81432.2| 456|Caenorhabditis elegans Tubulin, alpha
protein 9 protein.
Length = 456
Score = 123 bits (297), Expect = 7e-29
Identities = 68/166 (40%), Positives = 85/166 (51%)
Frame = +2
Query: 50 KMRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAG 229
+ RE IS+HVGQAGVQ+GNACWELYCLEHGIQPDG + + ++G DDSFNTFFSET AG
Sbjct: 5 RSREVISIHVGQAGVQMGNACWELYCLEHGIQPDGMINEEDSLGVDDDSFNTFFSETMAG 64
Query: 230 KHVPRAVFAIXXXXXXMRSALAHTDSCFIQNNLLLVRKMRXXXXXXXXXXLEXKS*IWF* 409
KHVPRA+ + F LL ++ + +
Sbjct: 65 KHVPRAIMVDLEPTPIDEIRTGTYKTLFHPEQLLTGKEDAANNYARGHYTIGKEIIDVVM 124
Query: 410 DRIRKLADQCXGLXGXLIXXXXXXXXXXXVTXL*WSGXXRXLGKKS 547
DR+R+L + C GL G L+ T L GKKS
Sbjct: 125 DRVRRLVENCRGLQGFLVFHSFGGGTGSGFTALLMERLSVDYGKKS 170
Score = 98.7 bits (235), Expect = 2e-21
Identities = 41/51 (80%), Positives = 48/51 (94%)
Frame = +1
Query: 256 DLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGXEIVDLVL 408
DLEPT +DE+RTGTY+ LFHPEQL+TGKEDAANNYARGHYTIG EI+D+V+
Sbjct: 74 DLEPTPIDEIRTGTYKTLFHPEQLLTGKEDAANNYARGHYTIGKEIIDVVM 124
>Z78062-1|CAB01495.1| 447|Caenorhabditis elegans Hypothetical
protein F16D3.1 protein.
Length = 447
Score = 121 bits (291), Expect = 4e-28
Identities = 61/137 (44%), Positives = 77/137 (56%)
Frame = +2
Query: 53 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGK 232
MRE +S+H+GQAGVQIGNACWELYCLEHGI PDG MP D + G D S+NTFFSET +GK
Sbjct: 1 MREIVSIHIGQAGVQIGNACWELYCLEHGITPDGLMPDDTSYGVEDQSYNTFFSETPSGK 60
Query: 233 HVPRAVFAIXXXXXXMRSALAHTDSCFIQNNLLLVRKMRXXXXXXXXXXLEXKS*IWF*D 412
HVPRA+F F L+ ++ + + D
Sbjct: 61 HVPRAIFVDLEPTVIDEVRTGTYAKLFHPEQLISGKEDAANNYARGHYTIGKELIDVVMD 120
Query: 413 RIRKLADQCXGLXGXLI 463
R+R+L ++C L G LI
Sbjct: 121 RVRRLTERCQSLQGFLI 137
Score = 99.5 bits (237), Expect = 1e-21
Identities = 42/51 (82%), Positives = 49/51 (96%)
Frame = +1
Query: 256 DLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGXEIVDLVL 408
DLEPTV+DEVRTGTY +LFHPEQLI+GKEDAANNYARGHYTIG E++D+V+
Sbjct: 69 DLEPTVIDEVRTGTYAKLFHPEQLISGKEDAANNYARGHYTIGKELIDVVM 119
>Z99709-10|CAB16856.1| 448|Caenorhabditis elegans Hypothetical
protein C47B2.3 protein.
Length = 448
Score = 120 bits (290), Expect = 5e-28
Identities = 68/165 (41%), Positives = 84/165 (50%)
Frame = +2
Query: 53 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGK 232
MRE IS+HVGQAGVQIGNACWELYCLEHGIQPDG MPT T G +SF TFFS+TG+G+
Sbjct: 1 MREVISIHVGQAGVQIGNACWELYCLEHGIQPDGTMPTQSTNEG--ESFTTFFSDTGSGR 58
Query: 233 HVPRAVFAIXXXXXXMRSALAHTDSCFIQNNLLLVRKMRXXXXXXXXXXLEXKS*IWF*D 412
+VPR++F F ++ ++ + + D
Sbjct: 59 YVPRSIFVDLEPTVVDEIRTGTYKKLFHPEQMITGKEDAANNYARGHYTVGKELIDTVLD 118
Query: 413 RIRKLADQCXGLXGXLIXXXXXXXXXXXVTXL*WSGXXRXLGKKS 547
RIR+LAD C GL G + T L GKKS
Sbjct: 119 RIRRLADNCSGLQGFFVFHSFGGGTGSGFTSLLMERLSVDYGKKS 163
Score = 101 bits (241), Expect = 5e-22
Identities = 42/51 (82%), Positives = 49/51 (96%)
Frame = +1
Query: 256 DLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGXEIVDLVL 408
DLEPTVVDE+RTGTY++LFHPEQ+ITGKEDAANNYARGHYT+G E++D VL
Sbjct: 67 DLEPTVVDEIRTGTYKKLFHPEQMITGKEDAANNYARGHYTVGKELIDTVL 117
>D14965-1|BAA03610.1| 448|Caenorhabditis elegans alpha-2 tubulin
protein.
Length = 448
Score = 120 bits (290), Expect = 5e-28
Identities = 68/165 (41%), Positives = 84/165 (50%)
Frame = +2
Query: 53 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGK 232
MRE IS+HVGQAGVQIGNACWELYCLEHGIQPDG MPT T G +SF TFFS+TG+G+
Sbjct: 1 MREVISIHVGQAGVQIGNACWELYCLEHGIQPDGTMPTQSTNEG--ESFTTFFSDTGSGR 58
Query: 233 HVPRAVFAIXXXXXXMRSALAHTDSCFIQNNLLLVRKMRXXXXXXXXXXLEXKS*IWF*D 412
+VPR++F F ++ ++ + + D
Sbjct: 59 YVPRSIFVDLEPTVVDEIRTGTYKKLFHPEQMITGKEDAANNYARGHYTVGKELIDTVLD 118
Query: 413 RIRKLADQCXGLXGXLIXXXXXXXXXXXVTXL*WSGXXRXLGKKS 547
RIR+LAD C GL G + T L GKKS
Sbjct: 119 RIRRLADNCSGLQGFFVFHSFGGGTGSGFTSLLMERLSVDYGKKS 163
Score = 101 bits (241), Expect = 5e-22
Identities = 42/51 (82%), Positives = 49/51 (96%)
Frame = +1
Query: 256 DLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGXEIVDLVL 408
DLEPTVVDE+RTGTY++LFHPEQ+ITGKEDAANNYARGHYT+G E++D VL
Sbjct: 67 DLEPTVVDEIRTGTYKKLFHPEQMITGKEDAANNYARGHYTVGKELIDTVL 117
>Z81070-8|CAB03001.1| 449|Caenorhabditis elegans Hypothetical
protein F26E4.8 protein.
Length = 449
Score = 119 bits (287), Expect = 1e-27
Identities = 67/165 (40%), Positives = 84/165 (50%)
Frame = +2
Query: 53 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGK 232
MRE IS+HVGQAGVQIGNACWELYCLEHGIQPDG MP+D+ G +SF TFFS+TG G+
Sbjct: 1 MREVISIHVGQAGVQIGNACWELYCLEHGIQPDGTMPSDQQADG--ESFTTFFSDTGNGR 58
Query: 233 HVPRAVFAIXXXXXXMRSALAHTDSCFIQNNLLLVRKMRXXXXXXXXXXLEXKS*IWF*D 412
+VPR++F F ++ ++ + + D
Sbjct: 59 YVPRSIFVDLEPTVVDEIRTGTYKKLFHPEQMITGKEDAANNYARGHYTVGKELIDTVLD 118
Query: 413 RIRKLADQCXGLXGXLIXXXXXXXXXXXVTXL*WSGXXRXLGKKS 547
RIR+LAD C GL G + T L GKKS
Sbjct: 119 RIRRLADNCSGLQGFFVFHSFGGGTGSGFTSLLMERLSVDYGKKS 163
Score = 101 bits (241), Expect = 5e-22
Identities = 42/51 (82%), Positives = 49/51 (96%)
Frame = +1
Query: 256 DLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGXEIVDLVL 408
DLEPTVVDE+RTGTY++LFHPEQ+ITGKEDAANNYARGHYT+G E++D VL
Sbjct: 67 DLEPTVVDEIRTGTYKKLFHPEQMITGKEDAANNYARGHYTVGKELIDTVL 117
>D16439-1|BAA03909.1| 449|Caenorhabditis elegans alpha-1 tubulin
protein.
Length = 449
Score = 119 bits (287), Expect = 1e-27
Identities = 67/165 (40%), Positives = 84/165 (50%)
Frame = +2
Query: 53 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGK 232
MRE IS+HVGQAGVQIGNACWELYCLEHGIQPDG MP+D+ G +SF TFFS+TG G+
Sbjct: 1 MREVISIHVGQAGVQIGNACWELYCLEHGIQPDGTMPSDQQADG--ESFTTFFSDTGNGR 58
Query: 233 HVPRAVFAIXXXXXXMRSALAHTDSCFIQNNLLLVRKMRXXXXXXXXXXLEXKS*IWF*D 412
+VPR++F F ++ ++ + + D
Sbjct: 59 YVPRSIFVDLEPTVVDEIRTGTYKKLFHPEQMITGKEDAANNYARGHYTVGKELIDTVLD 118
Query: 413 RIRKLADQCXGLXGXLIXXXXXXXXXXXVTXL*WSGXXRXLGKKS 547
RIR+LAD C GL G + T L GKKS
Sbjct: 119 RIRRLADNCSGLQGFFVFHSFGGGTGSGFTSLLMERLSVDYGKKS 163
Score = 101 bits (241), Expect = 5e-22
Identities = 42/51 (82%), Positives = 49/51 (96%)
Frame = +1
Query: 256 DLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGXEIVDLVL 408
DLEPTVVDE+RTGTY++LFHPEQ+ITGKEDAANNYARGHYT+G E++D VL
Sbjct: 67 DLEPTVVDEIRTGTYKKLFHPEQMITGKEDAANNYARGHYTVGKELIDTVL 117
>Z37092-12|CAA85463.1| 448|Caenorhabditis elegans Hypothetical
protein F44F4.11 protein.
Length = 448
Score = 119 bits (286), Expect = 2e-27
Identities = 67/165 (40%), Positives = 85/165 (51%)
Frame = +2
Query: 53 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGK 232
MRE IS+HVGQAGVQIGNACWELYCLEHGIQPDG MP+++ GG SF TFFS+TG G+
Sbjct: 1 MREVISIHVGQAGVQIGNACWELYCLEHGIQPDGTMPSEQQNEGG--SFTTFFSDTGNGR 58
Query: 233 HVPRAVFAIXXXXXXMRSALAHTDSCFIQNNLLLVRKMRXXXXXXXXXXLEXKS*IWF*D 412
+VPR++F + F ++ ++ + + D
Sbjct: 59 YVPRSIFVDLEPTVVDEIRTGNYKKLFHPEQMITGKEDAANNYARGHYTVGKELIDTTLD 118
Query: 413 RIRKLADQCXGLXGXLIXXXXXXXXXXXVTXL*WSGXXRXLGKKS 547
RIR+LAD C GL G + T L GKKS
Sbjct: 119 RIRRLADNCSGLQGFFVFHSFGGGTGSGFTSLLMERLSVDYGKKS 163
Score = 97.5 bits (232), Expect = 6e-21
Identities = 40/51 (78%), Positives = 47/51 (92%)
Frame = +1
Query: 256 DLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGXEIVDLVL 408
DLEPTVVDE+RTG Y++LFHPEQ+ITGKEDAANNYARGHYT+G E++D L
Sbjct: 67 DLEPTVVDEIRTGNYKKLFHPEQMITGKEDAANNYARGHYTVGKELIDTTL 117
>AL023832-2|CAA19476.1| 448|Caenorhabditis elegans Hypothetical
protein F44F4.11 protein.
Length = 448
Score = 119 bits (286), Expect = 2e-27
Identities = 67/165 (40%), Positives = 85/165 (51%)
Frame = +2
Query: 53 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGK 232
MRE IS+HVGQAGVQIGNACWELYCLEHGIQPDG MP+++ GG SF TFFS+TG G+
Sbjct: 1 MREVISIHVGQAGVQIGNACWELYCLEHGIQPDGTMPSEQQNEGG--SFTTFFSDTGNGR 58
Query: 233 HVPRAVFAIXXXXXXMRSALAHTDSCFIQNNLLLVRKMRXXXXXXXXXXLEXKS*IWF*D 412
+VPR++F + F ++ ++ + + D
Sbjct: 59 YVPRSIFVDLEPTVVDEIRTGNYKKLFHPEQMITGKEDAANNYARGHYTVGKELIDTTLD 118
Query: 413 RIRKLADQCXGLXGXLIXXXXXXXXXXXVTXL*WSGXXRXLGKKS 547
RIR+LAD C GL G + T L GKKS
Sbjct: 119 RIRRLADNCSGLQGFFVFHSFGGGTGSGFTSLLMERLSVDYGKKS 163
Score = 97.5 bits (232), Expect = 6e-21
Identities = 40/51 (78%), Positives = 47/51 (92%)
Frame = +1
Query: 256 DLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGXEIVDLVL 408
DLEPTVVDE+RTG Y++LFHPEQ+ITGKEDAANNYARGHYT+G E++D L
Sbjct: 67 DLEPTVVDEIRTGNYKKLFHPEQMITGKEDAANNYARGHYTVGKELIDTTL 117
>Z81523-9|CAB04246.2| 464|Caenorhabditis elegans Hypothetical
protein F32H2.9 protein.
Length = 464
Score = 110 bits (264), Expect = 7e-25
Identities = 58/136 (42%), Positives = 73/136 (53%)
Frame = +2
Query: 56 RECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGKH 235
RE IS+HVGQAGVQIGNACWEL+CLEHGIQPDG D T ++ NTFF+ET GKH
Sbjct: 8 REVISIHVGQAGVQIGNACWELFCLEHGIQPDGYHVEDDTYDEETETINTFFAETAGGKH 67
Query: 236 VPRAVFAIXXXXXXMRSALAHTDSCFIQNNLLLVRKMRXXXXXXXXXXLEXKS*IWF*DR 415
VPR +F S F LL ++ + + DR
Sbjct: 68 VPRCLFVDLEPTVVDEVRTGTYRSLFHPEQLLSGKEDAANCYARGRYTIGREMIDVVMDR 127
Query: 416 IRKLADQCXGLXGXLI 463
+++LA+ C GL G +I
Sbjct: 128 VKRLAENCNGLQGFVI 143
Score = 95.9 bits (228), Expect = 2e-20
Identities = 42/55 (76%), Positives = 48/55 (87%)
Frame = +1
Query: 244 CCLRDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGXEIVDLVL 408
C DLEPTVVDEVRTGTYR LFHPEQL++GKEDAAN YARG YTIG E++D+V+
Sbjct: 71 CLFVDLEPTVVDEVRTGTYRSLFHPEQLLSGKEDAANCYARGRYTIGREMIDVVM 125
>Z81134-1|CAB03447.1| 444|Caenorhabditis elegans Hypothetical
protein T28D6.2 protein.
Length = 444
Score = 106 bits (254), Expect = 1e-23
Identities = 63/165 (38%), Positives = 77/165 (46%)
Frame = +2
Query: 53 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGK 232
MRE IS+HVGQAGVQIGNACWELYCLEHGI PDG T G S TFFS+TG G+
Sbjct: 1 MREVISIHVGQAGVQIGNACWELYCLEHGILPDG---TSMEPDGNSGSLGTFFSDTGYGR 57
Query: 233 HVPRAVFAIXXXXXXMRSALAHTDSCFIQNNLLLVRKMRXXXXXXXXXXLEXKS*IWF*D 412
HVPR++F F +L ++ + + D
Sbjct: 58 HVPRSIFVDLEPTVVDEIRTGAYKKLFHPEQMLTGKEDAANNYARGHYTVGKEIIDTTLD 117
Query: 413 RIRKLADQCXGLXGXLIXXXXXXXXXXXVTXL*WSGXXRXLGKKS 547
RIR+LA+ C GL G + T + GKKS
Sbjct: 118 RIRRLANNCEGLQGFFVFHSFGGGTGSGFTSMLMERLSAEYGKKS 162
Score = 97.5 bits (232), Expect = 6e-21
Identities = 40/51 (78%), Positives = 47/51 (92%)
Frame = +1
Query: 256 DLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGXEIVDLVL 408
DLEPTVVDE+RTG Y++LFHPEQ++TGKEDAANNYARGHYT+G EI+D L
Sbjct: 66 DLEPTVVDEIRTGAYKKLFHPEQMLTGKEDAANNYARGHYTVGKEIIDTTL 116
>AB017191-1|BAA32601.1| 435|Caenorhabditis elegans alpha tubulin
(tba-6) protein.
Length = 435
Score = 95.9 bits (228), Expect = 2e-20
Identities = 42/55 (76%), Positives = 48/55 (87%)
Frame = +1
Query: 244 CCLRDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGXEIVDLVL 408
C DLEPTVVDEVRTGTYR LFHPEQL++GKEDAAN YARG YTIG E++D+V+
Sbjct: 43 CLFVDLEPTVVDEVRTGTYRSLFHPEQLLSGKEDAANCYARGRYTIGREMIDVVM 97
Score = 66.5 bits (155), Expect = 1e-11
Identities = 38/115 (33%), Positives = 53/115 (46%)
Frame = +2
Query: 119 LYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGKHVPRAVFAIXXXXXXMRSALAH 298
++CLEHGIQPDG D T ++ NTFF+ET GKHVPR +F
Sbjct: 1 MFCLEHGIQPDGYHVEDDTYDEETETINTFFAETAGGKHVPRCLFVDLEPTVVDEVRTGT 60
Query: 299 TDSCFIQNNLLLVRKMRXXXXXXXXXXLEXKS*IWF*DRIRKLADQCXGLXGXLI 463
S F LL ++ + + DR+++LA+ C GL G +I
Sbjct: 61 YRSLFHPEQLLSGKEDAANCYARGRYTIGREMIDVVMDRVKRLAENCNGLQGFVI 115
>Z37140-7|CAA85497.2| 452|Caenorhabditis elegans Hypothetical
protein ZK899.4 protein.
Length = 452
Score = 91.9 bits (218), Expect = 3e-19
Identities = 38/51 (74%), Positives = 45/51 (88%)
Frame = +1
Query: 256 DLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGXEIVDLVL 408
DLEPTV+DE+R G Y LFHP+Q+I GKEDAANNYARGHYTIG E++D+VL
Sbjct: 72 DLEPTVLDEIRNGVYGNLFHPDQIINGKEDAANNYARGHYTIGKELIDVVL 122
Score = 88.6 bits (210), Expect = 3e-18
Identities = 47/136 (34%), Positives = 68/136 (50%)
Frame = +2
Query: 56 RECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGKH 235
REC+S+H+GQAG QIGNACWELYC+EHG+ G + ++ S FFSE+ GKH
Sbjct: 6 RECVSIHIGQAGAQIGNACWELYCIEHGLDEAGFLKEEEK-NKKQQSLQAFFSESMNGKH 64
Query: 236 VPRAVFAIXXXXXXMRSALAHTDSCFIQNNLLLVRKMRXXXXXXXXXXLEXKS*IWF*DR 415
VPRA++ + F + ++ ++ + + DR
Sbjct: 65 VPRAIYVDLEPTVLDEIRNGVYGNLFHPDQIINGKEDAANNYARGHYTIGKELIDVVLDR 124
Query: 416 IRKLADQCXGLXGXLI 463
IRK + C GL G L+
Sbjct: 125 IRKQTENCEGLQGFLV 140
>Z46240-1|CAA86310.1| 444|Caenorhabditis elegans Hypothetical
protein B0272.1 protein.
Length = 444
Score = 67.3 bits (157), Expect = 7e-12
Identities = 29/54 (53%), Positives = 37/54 (68%)
Frame = +1
Query: 247 CLRDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGXEIVDLVL 408
CL DLEP +D VR G + QLF P+ + G+ A NN+A+GHYT G E+VD VL
Sbjct: 64 CLVDLEPGTMDSVRAGPFGQLFRPDNFVFGQSGAGNNWAKGHYTEGAELVDNVL 117
Score = 53.6 bits (123), Expect = 9e-08
Identities = 26/65 (40%), Positives = 35/65 (53%)
Frame = +2
Query: 53 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGK 232
MRE + + GQ G QIG WE+ EHGI P G D + + N +++E GK
Sbjct: 1 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGAYNGDSDL--QLERINVYYNEASGGK 58
Query: 233 HVPRA 247
+VPRA
Sbjct: 59 YVPRA 63
>Z92803-10|CAB07246.1| 449|Caenorhabditis elegans Hypothetical
protein K01G5.7 protein.
Length = 449
Score = 64.1 bits (149), Expect = 6e-11
Identities = 28/53 (52%), Positives = 37/53 (69%)
Frame = +1
Query: 250 LRDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGXEIVDLVL 408
L DLEP +D VR+G + QLF P+ + G+ A NN+A+GHYT G E+VD VL
Sbjct: 65 LVDLEPGTMDSVRSGPFGQLFRPDNFVFGQSGAGNNWAKGHYTEGAELVDNVL 117
Score = 58.0 bits (134), Expect = 4e-09
Identities = 28/66 (42%), Positives = 39/66 (59%)
Frame = +2
Query: 53 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGK 232
MRE + V GQ G QIG+ WE+ EHGIQPDG + + + + +++E GK
Sbjct: 1 MREIVHVQAGQCGNQIGSKFWEVISDEHGIQPDGTFKGESDL--QLERIDVYYNEANNGK 58
Query: 233 HVPRAV 250
+VPRAV
Sbjct: 59 YVPRAV 64
>Z77131-2|CAB00853.4| 444|Caenorhabditis elegans Hypothetical
protein C54C6.2 protein.
Length = 444
Score = 64.1 bits (149), Expect = 6e-11
Identities = 28/53 (52%), Positives = 37/53 (69%)
Frame = +1
Query: 250 LRDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGXEIVDLVL 408
L DLEP +D VR+G + QLF P+ + G+ A NN+A+GHYT G E+VD VL
Sbjct: 65 LVDLEPGTMDSVRSGPFGQLFRPDNFVFGQSGAGNNWAKGHYTEGAELVDNVL 117
Score = 59.3 bits (137), Expect = 2e-09
Identities = 29/66 (43%), Positives = 38/66 (57%)
Frame = +2
Query: 53 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGK 232
MRE + V GQ G QIG WE+ EHGIQPDG + + + N +++E GK
Sbjct: 1 MREIVHVQAGQCGNQIGAKFWEVISDEHGIQPDGTYKGESDL--QLERINVYYNEANGGK 58
Query: 233 HVPRAV 250
+VPRAV
Sbjct: 59 YVPRAV 64
>Z35597-5|CAA84648.1| 450|Caenorhabditis elegans Hypothetical
protein C36E8.5 protein.
Length = 450
Score = 64.1 bits (149), Expect = 6e-11
Identities = 28/53 (52%), Positives = 37/53 (69%)
Frame = +1
Query: 250 LRDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGXEIVDLVL 408
L DLEP +D VR+G + QLF P+ + G+ A NN+A+GHYT G E+VD VL
Sbjct: 65 LVDLEPGTMDSVRSGPFGQLFRPDNFVFGQSGAGNNWAKGHYTEGAELVDNVL 117
Score = 57.6 bits (133), Expect = 5e-09
Identities = 28/66 (42%), Positives = 39/66 (59%)
Frame = +2
Query: 53 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGK 232
MRE + V GQ G QIG+ WE+ EHGIQPDG + + + + +++E GK
Sbjct: 1 MREIVHVQAGQCGNQIGSKFWEVISDEHGIQPDGTFKGETDL--QLERIDVYYNEANNGK 58
Query: 233 HVPRAV 250
+VPRAV
Sbjct: 59 YVPRAV 64
>X15242-1|CAA33320.1| 441|Caenorhabditis elegans beta-tubulin
protein.
Length = 441
Score = 63.7 bits (148), Expect = 8e-11
Identities = 28/53 (52%), Positives = 37/53 (69%)
Frame = +1
Query: 250 LRDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGXEIVDLVL 408
L DLEP +D VR+G + QLF P+ + G+ A NN+A+GHYT G E+VD VL
Sbjct: 65 LVDLEPGTMDSVRSGPFGQLFRPDNYVFGQSGAGNNWAKGHYTEGAELVDNVL 117
Score = 59.7 bits (138), Expect = 1e-09
Identities = 28/66 (42%), Positives = 39/66 (59%)
Frame = +2
Query: 53 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGK 232
MRE + + GQ G QIG+ WE+ EHGI P GQ D + + N +++E G+ K
Sbjct: 1 MREIVHIQAGQCGNQIGSKFWEVISDEHGIDPSGQYVGDSDL--QLERINVYYNEAGSNK 58
Query: 233 HVPRAV 250
+VPRAV
Sbjct: 59 YVPRAV 64
>U70844-1|AAB09092.1| 441|Caenorhabditis elegans Mechanosensory
abnormality protein7 protein.
Length = 441
Score = 63.7 bits (148), Expect = 8e-11
Identities = 28/53 (52%), Positives = 37/53 (69%)
Frame = +1
Query: 250 LRDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGXEIVDLVL 408
L DLEP +D VR+G + QLF P+ + G+ A NN+A+GHYT G E+VD VL
Sbjct: 65 LVDLEPGTMDSVRSGPFGQLFRPDNYVFGQSGAGNNWAKGHYTEGAELVDNVL 117
Score = 59.7 bits (138), Expect = 1e-09
Identities = 28/66 (42%), Positives = 39/66 (59%)
Frame = +2
Query: 53 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGK 232
MRE + + GQ G QIG+ WE+ EHGI P GQ D + + N +++E G+ K
Sbjct: 1 MREIVHIQAGQCGNQIGSKFWEVISDEHGIDPSGQYVGDSDL--QLERINVYYNEAGSNK 58
Query: 233 HVPRAV 250
+VPRAV
Sbjct: 59 YVPRAV 64
>Z78200-11|CAB01587.2| 426|Caenorhabditis elegans Hypothetical
protein T04H1.9 protein.
Length = 426
Score = 55.2 bits (127), Expect = 3e-08
Identities = 25/53 (47%), Positives = 36/53 (67%)
Frame = +1
Query: 250 LRDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGXEIVDLVL 408
L DL+P ++ VR+ Y +LF PE ++G+ A NN++RG+Y G EIVD VL
Sbjct: 65 LVDLDPESINYVRSTQYGKLFDPENAVSGESGAGNNWSRGYYEQGAEIVDKVL 117
Score = 52.8 bits (121), Expect = 2e-07
Identities = 27/66 (40%), Positives = 36/66 (54%)
Frame = +2
Query: 53 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGK 232
M+E I+V VGQ G QIG WE EHG+Q DG D G + +++ E K
Sbjct: 1 MKEIINVQVGQCGNQIGAKFWEYISEEHGLQTDGTYKGDN--GSQLERITSYYKEMEGRK 58
Query: 233 HVPRAV 250
+VPRA+
Sbjct: 59 YVPRAI 64
>Z78198-13|CAB01575.2| 426|Caenorhabditis elegans Hypothetical
protein T04H1.9 protein.
Length = 426
Score = 55.2 bits (127), Expect = 3e-08
Identities = 25/53 (47%), Positives = 36/53 (67%)
Frame = +1
Query: 250 LRDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGXEIVDLVL 408
L DL+P ++ VR+ Y +LF PE ++G+ A NN++RG+Y G EIVD VL
Sbjct: 65 LVDLDPESINYVRSTQYGKLFDPENAVSGESGAGNNWSRGYYEQGAEIVDKVL 117
Score = 52.8 bits (121), Expect = 2e-07
Identities = 27/66 (40%), Positives = 36/66 (54%)
Frame = +2
Query: 53 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGK 232
M+E I+V VGQ G QIG WE EHG+Q DG D G + +++ E K
Sbjct: 1 MKEIINVQVGQCGNQIGAKFWEYISEEHGLQTDGTYKGDN--GSQLERITSYYKEMEGRK 58
Query: 233 HVPRAV 250
+VPRA+
Sbjct: 59 YVPRAI 64
>Z22179-11|CAA80164.1| 444|Caenorhabditis elegans Hypothetical
protein F58A4.8 protein.
Length = 444
Score = 39.9 bits (89), Expect = 0.001
Identities = 22/62 (35%), Positives = 32/62 (51%)
Frame = +2
Query: 65 ISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGKHVPR 244
++VHVGQ G Q+ A W+ EHGI GQ + + +D + F + +VPR
Sbjct: 8 MTVHVGQCGNQLAQAFWKSMVDEHGINERGQTTHEDDM---NDKKDLLFYQADDDHYVPR 64
Query: 245 AV 250
AV
Sbjct: 65 AV 66
>AF287259-1|AAG24513.1| 444|Caenorhabditis elegans gamma-tubulin
protein.
Length = 444
Score = 39.9 bits (89), Expect = 0.001
Identities = 22/62 (35%), Positives = 32/62 (51%)
Frame = +2
Query: 65 ISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGKHVPR 244
++VHVGQ G Q+ A W+ EHGI GQ + + +D + F + +VPR
Sbjct: 8 MTVHVGQCGNQLAQAFWKSMVDEHGINERGQTTHEDDM---NDKKDLLFYQADDDHYVPR 64
Query: 245 AV 250
AV
Sbjct: 65 AV 66
>AL161712-9|CAC70134.1| 343|Caenorhabditis elegans Hypothetical
protein Y66D12A.12 protein.
Length = 343
Score = 31.9 bits (69), Expect = 0.31
Identities = 18/52 (34%), Positives = 31/52 (59%)
Frame = +3
Query: 81 AKPESRSVMPAGSFTAWSTASSLMARCPQTRPSGVETILSTLSSARPELAST 236
A P MP+ S + S++SS M + P+ PS ++T+L+++ + E AST
Sbjct: 189 ATPALLPFMPSSSTFSASSSSSEMEQTPE--PSSLDTVLTSMMNNNEEAAST 238
>AY572975-1|AAT77228.1| 580|Caenorhabditis elegans KQT-3 potassium
channel protein.
Length = 580
Score = 27.9 bits (59), Expect = 5.1
Identities = 16/35 (45%), Positives = 21/35 (60%)
Frame = +1
Query: 157 DAHRQDHRGWRRFFQHFLQRDRSWQARXPCCLRDL 261
DAHR R RR ++F+ R R QAR P +RD+
Sbjct: 422 DAHRNAIRAIRRV-KYFVARRRFQQARKPYDVRDV 455
>AL032648-2|CAA21699.2| 621|Caenorhabditis elegans Hypothetical
protein Y54G9A.3 protein.
Length = 621
Score = 27.9 bits (59), Expect = 5.1
Identities = 16/35 (45%), Positives = 21/35 (60%)
Frame = +1
Query: 157 DAHRQDHRGWRRFFQHFLQRDRSWQARXPCCLRDL 261
DAHR R RR ++F+ R R QAR P +RD+
Sbjct: 463 DAHRNAIRAIRRV-KYFVARRRFQQARKPYDVRDV 496
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,381,955
Number of Sequences: 27780
Number of extensions: 236374
Number of successful extensions: 688
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 610
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 672
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1113119490
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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