Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0287.Seq
(548 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g50010.1 68414.m05612 tubulin alpha-2/alpha-4 chain (TUA2) id... 157 6e-39
At1g04820.1 68414.m00478 tubulin alpha-2/alpha-4 chain (TUA4) ne... 157 6e-39
At4g14960.2 68417.m02299 tubulin alpha-6 chain (TUA6) nearly ide... 155 1e-38
At4g14960.1 68417.m02298 tubulin alpha-6 chain (TUA6) nearly ide... 155 1e-38
At5g19780.1 68418.m02351 tubulin alpha-3/alpha-5 chain (TUA5) ne... 137 4e-33
At5g19770.1 68418.m02350 tubulin alpha-3/alpha-5 chain (TUA3) ne... 137 4e-33
At1g64740.1 68414.m07340 tubulin alpha-1 chain (TUA1) nearly ide... 130 8e-31
At5g12250.1 68418.m01439 tubulin beta-6 chain (TUB6) nearly iden... 68 5e-12
At5g23860.1 68418.m02801 tubulin beta-8 chain (TUB8) (TUBB8) ide... 66 2e-11
At2g29550.1 68415.m03589 tubulin beta-7 chain (TUB7) identical t... 66 2e-11
At1g75780.1 68414.m08801 tubulin beta-1 chain (TUB1) nearly iden... 66 2e-11
At1g20010.1 68414.m02506 tubulin beta-5 chain (TUB5) nearly iden... 64 6e-11
At5g62700.1 68418.m07868 tubulin beta-2/beta-3 chain (TUB3) near... 63 1e-10
At5g62690.1 68418.m07867 tubulin beta-2/beta-3 chain (TUB2) near... 63 1e-10
At5g44340.1 68418.m05429 tubulin beta-4 chain (TUB4) nearly iden... 63 1e-10
At4g20890.1 68417.m03029 tubulin beta-9 chain (TUB9) nearly iden... 63 1e-10
At5g05620.1 68418.m00612 tubulin gamma-2 chain / gamma-2 tubulin... 54 6e-08
At3g61650.1 68416.m06909 tubulin gamma-1 chain / gamma-1 tubulin... 54 6e-08
At2g31690.1 68415.m03868 lipase class 3 family protein similar t... 30 1.2
At5g09370.1 68418.m01085 protease inhibitor/seed storage/lipid t... 29 2.0
At1g07160.1 68414.m00762 protein phosphatase 2C, putative / PP2C... 28 3.6
At5g14420.4 68418.m01687 copine-related low similarity to SP|Q99... 27 8.3
At5g14420.3 68418.m01686 copine-related low similarity to SP|Q99... 27 8.3
At5g14420.2 68418.m01685 copine-related low similarity to SP|Q99... 27 8.3
At5g14420.1 68418.m01684 copine-related low similarity to SP|Q99... 27 8.3
At4g31670.1 68417.m04497 ubiquitin carboxyl-terminal hydrolase f... 27 8.3
At2g40070.1 68415.m04923 expressed protein 27 8.3
At1g52160.1 68414.m05887 metallo-beta-lactamase family protein 27 8.3
>At1g50010.1 68414.m05612 tubulin alpha-2/alpha-4 chain (TUA2)
identical to tubulin alpha-2/alpha-4 chain SP|P29510
GB:P29510 from [Arabidopsis thaliana]
Length = 450
Score = 157 bits (380), Expect = 6e-39
Identities = 75/137 (54%), Positives = 88/137 (64%)
Frame = +2
Query: 53 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGK 232
MRECIS+H+GQAG+Q+GNACWELYCLEHGIQPDGQMP+DKT+GGGDD+FNTFFSETGAGK
Sbjct: 1 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGK 60
Query: 233 HVPRAVFAIXXXXXXMRSALAHTDSCFIQNNLLLVRKMRXXXXXXXXXXLEXKS*IWF*D 412
HVPRAVF F L+ ++ + + D
Sbjct: 61 HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLD 120
Query: 413 RIRKLADQCXGLXGXLI 463
RIRKLAD C GL G L+
Sbjct: 121 RIRKLADNCTGLQGFLV 137
Score = 103 bits (246), Expect = 1e-22
Identities = 46/51 (90%), Positives = 49/51 (96%)
Frame = +1
Query: 256 DLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGXEIVDLVL 408
DLEPTV+DEVRTGTYRQLFHPEQLI+GKEDAANN+ARGHYTIG EIVDL L
Sbjct: 69 DLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCL 119
>At1g04820.1 68414.m00478 tubulin alpha-2/alpha-4 chain (TUA4)
nearly identical to SP:P29510 Tubulin alpha-2/alpha-4
chain from [Arabidopsis thaliana]
Length = 450
Score = 157 bits (380), Expect = 6e-39
Identities = 75/137 (54%), Positives = 88/137 (64%)
Frame = +2
Query: 53 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGK 232
MRECIS+H+GQAG+Q+GNACWELYCLEHGIQPDGQMP+DKT+GGGDD+FNTFFSETGAGK
Sbjct: 1 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGK 60
Query: 233 HVPRAVFAIXXXXXXMRSALAHTDSCFIQNNLLLVRKMRXXXXXXXXXXLEXKS*IWF*D 412
HVPRAVF F L+ ++ + + D
Sbjct: 61 HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLD 120
Query: 413 RIRKLADQCXGLXGXLI 463
RIRKLAD C GL G L+
Sbjct: 121 RIRKLADNCTGLQGFLV 137
Score = 103 bits (246), Expect = 1e-22
Identities = 46/51 (90%), Positives = 49/51 (96%)
Frame = +1
Query: 256 DLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGXEIVDLVL 408
DLEPTV+DEVRTGTYRQLFHPEQLI+GKEDAANN+ARGHYTIG EIVDL L
Sbjct: 69 DLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCL 119
>At4g14960.2 68417.m02299 tubulin alpha-6 chain (TUA6) nearly
identical to SP|P29511 Tubulin alpha-6 chain
{Arabidopsis thaliana}
Length = 450
Score = 155 bits (377), Expect = 1e-38
Identities = 75/137 (54%), Positives = 87/137 (63%)
Frame = +2
Query: 53 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGK 232
MRECIS+H+GQAG+Q+GNACWELYCLEHGIQPDGQMP DKT+GGGDD+FNTFFSETGAGK
Sbjct: 1 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPGDKTVGGGDDAFNTFFSETGAGK 60
Query: 233 HVPRAVFAIXXXXXXMRSALAHTDSCFIQNNLLLVRKMRXXXXXXXXXXLEXKS*IWF*D 412
HVPRAVF F L+ ++ + + D
Sbjct: 61 HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLD 120
Query: 413 RIRKLADQCXGLXGXLI 463
RIRKLAD C GL G L+
Sbjct: 121 RIRKLADNCTGLQGFLV 137
Score = 103 bits (246), Expect = 1e-22
Identities = 46/51 (90%), Positives = 49/51 (96%)
Frame = +1
Query: 256 DLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGXEIVDLVL 408
DLEPTV+DEVRTGTYRQLFHPEQLI+GKEDAANN+ARGHYTIG EIVDL L
Sbjct: 69 DLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCL 119
>At4g14960.1 68417.m02298 tubulin alpha-6 chain (TUA6) nearly
identical to SP|P29511 Tubulin alpha-6 chain
{Arabidopsis thaliana}
Length = 427
Score = 155 bits (377), Expect = 1e-38
Identities = 75/137 (54%), Positives = 87/137 (63%)
Frame = +2
Query: 53 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGK 232
MRECIS+H+GQAG+Q+GNACWELYCLEHGIQPDGQMP DKT+GGGDD+FNTFFSETGAGK
Sbjct: 1 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPGDKTVGGGDDAFNTFFSETGAGK 60
Query: 233 HVPRAVFAIXXXXXXMRSALAHTDSCFIQNNLLLVRKMRXXXXXXXXXXLEXKS*IWF*D 412
HVPRAVF F L+ ++ + + D
Sbjct: 61 HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLD 120
Query: 413 RIRKLADQCXGLXGXLI 463
RIRKLAD C GL G L+
Sbjct: 121 RIRKLADNCTGLQGFLV 137
Score = 103 bits (246), Expect = 1e-22
Identities = 46/51 (90%), Positives = 49/51 (96%)
Frame = +1
Query: 256 DLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGXEIVDLVL 408
DLEPTV+DEVRTGTYRQLFHPEQLI+GKEDAANN+ARGHYTIG EIVDL L
Sbjct: 69 DLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCL 119
>At5g19780.1 68418.m02351 tubulin alpha-3/alpha-5 chain (TUA5)
nearly identical to SP|P20363 Tubulin alpha-3/alpha-5
chain {Arabidopsis thaliana}
Length = 450
Score = 137 bits (332), Expect = 4e-33
Identities = 67/137 (48%), Positives = 82/137 (59%)
Frame = +2
Query: 53 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGK 232
MRE IS+H+GQAG+Q+GN+CWELYCLEHGIQPDG MP+D T+G D+FNTFFSETGAGK
Sbjct: 1 MREIISIHIGQAGIQVGNSCWELYCLEHGIQPDGMMPSDTTVGVAHDAFNTFFSETGAGK 60
Query: 233 HVPRAVFAIXXXXXXMRSALAHTDSCFIQNNLLLVRKMRXXXXXXXXXXLEXKS*IWF*D 412
HVPRAVF F L+ ++ + + D
Sbjct: 61 HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTVGKEIVDLCLD 120
Query: 413 RIRKLADQCXGLXGXLI 463
R+RKLAD C GL G L+
Sbjct: 121 RVRKLADNCTGLQGFLV 137
Score = 102 bits (245), Expect = 1e-22
Identities = 45/51 (88%), Positives = 49/51 (96%)
Frame = +1
Query: 256 DLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGXEIVDLVL 408
DLEPTV+DEVRTGTYRQLFHPEQLI+GKEDAANN+ARGHYT+G EIVDL L
Sbjct: 69 DLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTVGKEIVDLCL 119
>At5g19770.1 68418.m02350 tubulin alpha-3/alpha-5 chain (TUA3)
nearly identical to SP|P20363 Tubulin alpha-3/alpha-5
chain {Arabidopsis thaliana}
Length = 450
Score = 137 bits (332), Expect = 4e-33
Identities = 67/137 (48%), Positives = 82/137 (59%)
Frame = +2
Query: 53 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGK 232
MRE IS+H+GQAG+Q+GN+CWELYCLEHGIQPDG MP+D T+G D+FNTFFSETGAGK
Sbjct: 1 MREIISIHIGQAGIQVGNSCWELYCLEHGIQPDGMMPSDTTVGVAHDAFNTFFSETGAGK 60
Query: 233 HVPRAVFAIXXXXXXMRSALAHTDSCFIQNNLLLVRKMRXXXXXXXXXXLEXKS*IWF*D 412
HVPRAVF F L+ ++ + + D
Sbjct: 61 HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTVGKEIVDLCLD 120
Query: 413 RIRKLADQCXGLXGXLI 463
R+RKLAD C GL G L+
Sbjct: 121 RVRKLADNCTGLQGFLV 137
Score = 102 bits (245), Expect = 1e-22
Identities = 45/51 (88%), Positives = 49/51 (96%)
Frame = +1
Query: 256 DLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGXEIVDLVL 408
DLEPTV+DEVRTGTYRQLFHPEQLI+GKEDAANN+ARGHYT+G EIVDL L
Sbjct: 69 DLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTVGKEIVDLCL 119
>At1g64740.1 68414.m07340 tubulin alpha-1 chain (TUA1) nearly
identical to SP|P11139 Tubulin alpha-1 chain
{Arabidopsis thaliana}
Length = 450
Score = 130 bits (313), Expect = 8e-31
Identities = 63/137 (45%), Positives = 81/137 (59%)
Frame = +2
Query: 53 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGK 232
MRE IS+H+GQAG+Q+GN+CWELYCLEHGIQPDG MP+D T+G D+FNTFFSET +G+
Sbjct: 1 MREIISIHIGQAGIQVGNSCWELYCLEHGIQPDGTMPSDSTVGACHDAFNTFFSETSSGQ 60
Query: 233 HVPRAVFAIXXXXXXMRSALAHTDSCFIQNNLLLVRKMRXXXXXXXXXXLEXKS*IWF*D 412
HVPRAVF F L+ ++ + + +
Sbjct: 61 HVPRAVFLDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTVGREIVDTCLE 120
Query: 413 RIRKLADQCXGLXGXLI 463
R+RKLAD C GL G L+
Sbjct: 121 RLRKLADNCTGLQGFLV 137
Score = 102 bits (244), Expect = 2e-22
Identities = 48/71 (67%), Positives = 52/71 (73%)
Frame = +1
Query: 196 FQHFLQRDRSWQARXPCCLRDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHY 375
F F S Q DLEPTV+DEVRTGTYRQLFHPEQLI+GKEDAANN+ARGHY
Sbjct: 49 FNTFFSETSSGQHVPRAVFLDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHY 108
Query: 376 TIGXEIVDLVL 408
T+G EIVD L
Sbjct: 109 TVGREIVDTCL 119
>At5g12250.1 68418.m01439 tubulin beta-6 chain (TUB6) nearly
identical to SP|P29514 Tubulin beta-6 chain {Arabidopsis
thaliana}
Length = 449
Score = 67.7 bits (158), Expect = 5e-12
Identities = 28/53 (52%), Positives = 37/53 (69%)
Frame = +1
Query: 250 LRDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGXEIVDLVL 408
L DLEP +D VRTG Y Q+F P+ + G+ A NN+A+GHYT G E++D VL
Sbjct: 65 LMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVL 117
Score = 56.4 bits (130), Expect = 1e-08
Identities = 27/69 (39%), Positives = 40/69 (57%), Gaps = 3/69 (4%)
Frame = +2
Query: 53 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGD---DSFNTFFSETG 223
MRE + + GQ G QIG+ WE+ C EHGI P G + +G D + N +++E
Sbjct: 1 MREILHIQGGQCGNQIGSKFWEVVCDEHGIDPTG-----RYVGNSDLQLERVNVYYNEAS 55
Query: 224 AGKHVPRAV 250
G++VPRA+
Sbjct: 56 CGRYVPRAI 64
>At5g23860.1 68418.m02801 tubulin beta-8 chain (TUB8) (TUBB8)
identical to SP|P29516 Tubulin beta-8 chain {Arabidopsis
thaliana}; supporting cDNA gi|15451225|gb|AY054693.1|
Length = 449
Score = 65.7 bits (153), Expect = 2e-11
Identities = 27/53 (50%), Positives = 37/53 (69%)
Frame = +1
Query: 250 LRDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGXEIVDLVL 408
L DLEP +D VR+G Y Q+F P+ + G+ A NN+A+GHYT G E++D VL
Sbjct: 65 LMDLEPGTMDSVRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVL 117
Score = 52.4 bits (120), Expect = 2e-07
Identities = 25/66 (37%), Positives = 36/66 (54%)
Frame = +2
Query: 53 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGK 232
MRE + + GQ G QIG WE+ C EHGI G+ + + + N +++E G+
Sbjct: 1 MREILHIQGGQCGNQIGAKFWEVVCAEHGIDSTGRYQGENDL--QLERVNVYYNEASCGR 58
Query: 233 HVPRAV 250
VPRAV
Sbjct: 59 FVPRAV 64
>At2g29550.1 68415.m03589 tubulin beta-7 chain (TUB7) identical to
GB:M84704 SP|P29515 Tubulin beta-7 chain {Arabidopsis
thaliana}
Length = 449
Score = 65.7 bits (153), Expect = 2e-11
Identities = 27/53 (50%), Positives = 37/53 (69%)
Frame = +1
Query: 250 LRDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGXEIVDLVL 408
L DLEP +D VR+G Y Q+F P+ + G+ A NN+A+GHYT G E++D VL
Sbjct: 65 LMDLEPGTMDSVRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVL 117
Score = 53.2 bits (122), Expect = 1e-07
Identities = 26/66 (39%), Positives = 38/66 (57%)
Frame = +2
Query: 53 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGK 232
MRE + + GQ G QIG+ WE+ LEHGI G+ D + + N +++E G+
Sbjct: 1 MREILHIQGGQCGNQIGSKFWEVVNLEHGIDQTGRYVGDSEL--QLERVNVYYNEASCGR 58
Query: 233 HVPRAV 250
+VPRAV
Sbjct: 59 YVPRAV 64
>At1g75780.1 68414.m08801 tubulin beta-1 chain (TUB1) nearly
identical to SP|P12411 Tubulin beta-1 chain {Arabidopsis
thaliana}
Length = 447
Score = 65.7 bits (153), Expect = 2e-11
Identities = 26/53 (49%), Positives = 37/53 (69%)
Frame = +1
Query: 250 LRDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGXEIVDLVL 408
L DLEP +D +R+G Y Q+F P+ + G+ A NN+A+GHYT G E++D VL
Sbjct: 66 LMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVL 118
Score = 56.8 bits (131), Expect = 9e-09
Identities = 27/66 (40%), Positives = 39/66 (59%)
Frame = +2
Query: 53 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGK 232
MRE + V GQ G QIG+ WE+ C EHG+ P G+ D + + N +++E G+
Sbjct: 1 MREILHVQGGQCGNQIGSKFWEVICDEHGVDPTGRYNGD-SADLQLERINVYYNEASGGR 59
Query: 233 HVPRAV 250
+VPRAV
Sbjct: 60 YVPRAV 65
>At1g20010.1 68414.m02506 tubulin beta-5 chain (TUB5) nearly
identical to SP|P29513 Tubulin beta-5 chain {Arabidopsis
thaliana}
Length = 449
Score = 64.1 bits (149), Expect = 6e-11
Identities = 25/53 (47%), Positives = 37/53 (69%)
Frame = +1
Query: 250 LRDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGXEIVDLVL 408
L DLEP +D +R+G + Q+F P+ + G+ A NN+A+GHYT G E++D VL
Sbjct: 66 LMDLEPGTMDSIRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVL 118
Score = 55.6 bits (128), Expect = 2e-08
Identities = 27/66 (40%), Positives = 38/66 (57%)
Frame = +2
Query: 53 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGK 232
MRE + + GQ G QIG+ WE+ C EHGI G+ D T + N +++E G+
Sbjct: 1 MREILHIQGGQCGNQIGSKFWEVICDEHGIDSTGRYSGD-TADLQLERINVYYNEASGGR 59
Query: 233 HVPRAV 250
+VPRAV
Sbjct: 60 YVPRAV 65
>At5g62700.1 68418.m07868 tubulin beta-2/beta-3 chain (TUB3) nearly
identical to SP|P29512 Tubulin beta-2/beta-3 chain
{Arabidopsis thaliana}
Length = 450
Score = 63.3 bits (147), Expect = 1e-10
Identities = 26/53 (49%), Positives = 36/53 (67%)
Frame = +1
Query: 250 LRDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGXEIVDLVL 408
L DLEP +D +R+G Y Q F P+ + G+ A NN+A+GHYT G E++D VL
Sbjct: 65 LMDLEPGTMDSLRSGPYGQTFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVL 117
Score = 57.6 bits (133), Expect = 5e-09
Identities = 27/66 (40%), Positives = 37/66 (56%)
Frame = +2
Query: 53 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGK 232
MRE + + GQ G QIG WE+ C EHGI P G+ D + + N +++E G+
Sbjct: 1 MREILHIQGGQCGNQIGAKFWEVVCAEHGIDPTGRYTGDSDL--QLERINVYYNEASCGR 58
Query: 233 HVPRAV 250
VPRAV
Sbjct: 59 FVPRAV 64
>At5g62690.1 68418.m07867 tubulin beta-2/beta-3 chain (TUB2) nearly
identical to SP|P29512 Tubulin beta-2/beta-3 chain
{Arabidopsis thaliana}
Length = 450
Score = 63.3 bits (147), Expect = 1e-10
Identities = 26/53 (49%), Positives = 36/53 (67%)
Frame = +1
Query: 250 LRDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGXEIVDLVL 408
L DLEP +D +R+G Y Q F P+ + G+ A NN+A+GHYT G E++D VL
Sbjct: 65 LMDLEPGTMDSLRSGPYGQTFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVL 117
Score = 57.6 bits (133), Expect = 5e-09
Identities = 27/66 (40%), Positives = 37/66 (56%)
Frame = +2
Query: 53 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGK 232
MRE + + GQ G QIG WE+ C EHGI P G+ D + + N +++E G+
Sbjct: 1 MREILHIQGGQCGNQIGAKFWEVVCAEHGIDPTGRYTGDSDL--QLERINVYYNEASCGR 58
Query: 233 HVPRAV 250
VPRAV
Sbjct: 59 FVPRAV 64
>At5g44340.1 68418.m05429 tubulin beta-4 chain (TUB4) nearly
identical to SP|P24636 Tubulin beta-4 chain {Arabidopsis
thaliana}
Length = 444
Score = 62.9 bits (146), Expect = 1e-10
Identities = 25/53 (47%), Positives = 37/53 (69%)
Frame = +1
Query: 250 LRDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGXEIVDLVL 408
L DLEP +D +R+G + Q+F P+ + G+ A NN+A+GHYT G E++D VL
Sbjct: 65 LMDLEPGTMDSLRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVL 117
Score = 55.6 bits (128), Expect = 2e-08
Identities = 28/66 (42%), Positives = 37/66 (56%)
Frame = +2
Query: 53 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGK 232
MRE + + GQ G QIG WE+ C EHGI GQ D + + + +F+E GK
Sbjct: 1 MREILHIQGGQCGNQIGAKFWEVICDEHGIDHTGQYVGDSPL--QLERIDVYFNEASGGK 58
Query: 233 HVPRAV 250
+VPRAV
Sbjct: 59 YVPRAV 64
>At4g20890.1 68417.m03029 tubulin beta-9 chain (TUB9) nearly
identical to SP|P29517 Tubulin beta-9 chain {Arabidopsis
thaliana}
Length = 444
Score = 62.9 bits (146), Expect = 1e-10
Identities = 25/53 (47%), Positives = 37/53 (69%)
Frame = +1
Query: 250 LRDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGXEIVDLVL 408
L DLEP +D +R+G + Q+F P+ + G+ A NN+A+GHYT G E++D VL
Sbjct: 65 LMDLEPGTMDSLRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVL 117
Score = 57.2 bits (132), Expect = 7e-09
Identities = 29/66 (43%), Positives = 37/66 (56%)
Frame = +2
Query: 53 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGK 232
MRE + + GQ G QIG WE+ C EHGI GQ D + + N +F+E GK
Sbjct: 1 MREILHIQGGQCGNQIGAKFWEVICGEHGIDQTGQSCGDTDL--QLERINVYFNEASGGK 58
Query: 233 HVPRAV 250
+VPRAV
Sbjct: 59 YVPRAV 64
>At5g05620.1 68418.m00612 tubulin gamma-2 chain / gamma-2 tubulin
(TUBG2) identical to SP|P38558 Tubulin gamma-2 chain
(Gamma-2 tubulin) {Arabidopsis thaliana}
Length = 474
Score = 54.0 bits (124), Expect = 6e-08
Identities = 28/65 (43%), Positives = 37/65 (56%)
Frame = +2
Query: 56 RECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGKH 235
RE I++ VGQ G QIG W+ CLEHGI DG + T GG D + FF + +
Sbjct: 3 REIITLQVGQCGNQIGMEFWKQLCLEHGISKDGILEDFATQGG--DRKDVFFYQADDQHY 60
Query: 236 VPRAV 250
+PRA+
Sbjct: 61 IPRAL 65
Score = 37.1 bits (82), Expect = 0.008
Identities = 19/57 (33%), Positives = 33/57 (57%), Gaps = 5/57 (8%)
Frame = +1
Query: 250 LRDLEPTVVDEVRTGTYRQLFHPEQLITGKE--DAANNYARGHYT---IGXEIVDLV 405
L DLEP V++ ++ G YR L++ E + A NN+A G++ + EI+D++
Sbjct: 66 LIDLEPRVINGIQNGEYRNLYNHENIFLSDHGGGAGNNWASGYHQGKGVEEEIMDMI 122
>At3g61650.1 68416.m06909 tubulin gamma-1 chain / gamma-1 tubulin
(TUBG1) identical to SP|P38557 Tubulin gamma-1 chain
(Gamma-1 tubulin) {Arabidopsis thaliana}
Length = 474
Score = 54.0 bits (124), Expect = 6e-08
Identities = 28/65 (43%), Positives = 37/65 (56%)
Frame = +2
Query: 56 RECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGKH 235
RE I++ VGQ G QIG W+ CLEHGI DG + T GG D + FF + +
Sbjct: 3 REIITLQVGQCGNQIGMEFWKQLCLEHGISKDGILEDFATQGG--DRKDVFFYQADDQHY 60
Query: 236 VPRAV 250
+PRA+
Sbjct: 61 IPRAL 65
Score = 37.5 bits (83), Expect = 0.006
Identities = 19/57 (33%), Positives = 33/57 (57%), Gaps = 5/57 (8%)
Frame = +1
Query: 250 LRDLEPTVVDEVRTGTYRQLFHPEQLITGKE--DAANNYARGHYT---IGXEIVDLV 405
L DLEP V++ ++ G YR L++ E + A NN+A G++ + EI+D++
Sbjct: 66 LIDLEPRVINGIQNGDYRNLYNHENIFVADHGGGAGNNWASGYHQGKGVEEEIMDMI 122
>At2g31690.1 68415.m03868 lipase class 3 family protein similar to
DEFECTIVE IN ANTHER DEHISCENCE1 [Arabidopsis thaliana]
GI:16215706; contains Pfam profile PF01764: Lipase
Length = 484
Score = 29.9 bits (64), Expect = 1.2
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = -3
Query: 276 NNSRFKIAKTARGTCLPAPVSLKKVLKESSPPPM 175
N R K A ++ + L APV L + SSPPP+
Sbjct: 38 NPKRLKTANSSSSSSLLAPVILNSPVASSSPPPI 71
>At5g09370.1 68418.m01085 protease inhibitor/seed storage/lipid
transfer protein (LTP) family protein similar to lipid
transfer protein - Hordeum vulgare, EMBL:AF109195;
contains Pfam protease inhibitor/seed storage/LTP family
domain PF00234
Length = 158
Score = 29.1 bits (62), Expect = 2.0
Identities = 14/42 (33%), Positives = 17/42 (40%)
Frame = -3
Query: 222 PVSLKKVLKESSPPPMVLSVGIWPSGWMPCSRQ*SSQQALPI 97
PVS L +SPP +W SGW P +PI
Sbjct: 101 PVSACDSLPPASPPTANGQAPVWGSGWAPAPSPSKGNSLIPI 142
>At1g07160.1 68414.m00762 protein phosphatase 2C, putative / PP2C,
putative similar to protein phosphatase 2C GI:2582800
from [Medicago sativa]
Length = 380
Score = 28.3 bits (60), Expect = 3.6
Identities = 15/48 (31%), Positives = 24/48 (50%)
Frame = +3
Query: 129 WSTASSLMARCPQTRPSGVETILSTLSSARPELASTXPVLSSRS*TYC 272
+S +SSL P ET+ +LS P ++ST P +S + +C
Sbjct: 13 FSPSSSLFCNKPLNTSPAHETLTLSLSHLNPPVSSTSPSAASPTSPFC 60
>At5g14420.4 68418.m01687 copine-related low similarity to SP|Q99829
Copine I {Homo sapiens}
Length = 468
Score = 27.1 bits (57), Expect = 8.3
Identities = 18/57 (31%), Positives = 29/57 (50%)
Frame = -2
Query: 217 LAEESVERIVSTPDGLVCGHLAIRLDAVLQAVKLPAGITDLDSGLANVYRDALTHFD 47
+A+ V R V T +G + +DA++QA KLP I + G+ + D + FD
Sbjct: 250 IADGQVTRSVDTENGQLSPQEQKTVDAIVQASKLPLSIVLV--GVGDGPWDMMREFD 304
>At5g14420.3 68418.m01686 copine-related low similarity to SP|Q99829
Copine I {Homo sapiens}
Length = 468
Score = 27.1 bits (57), Expect = 8.3
Identities = 18/57 (31%), Positives = 29/57 (50%)
Frame = -2
Query: 217 LAEESVERIVSTPDGLVCGHLAIRLDAVLQAVKLPAGITDLDSGLANVYRDALTHFD 47
+A+ V R V T +G + +DA++QA KLP I + G+ + D + FD
Sbjct: 250 IADGQVTRSVDTENGQLSPQEQKTVDAIVQASKLPLSIVLV--GVGDGPWDMMREFD 304
>At5g14420.2 68418.m01685 copine-related low similarity to SP|Q99829
Copine I {Homo sapiens}
Length = 468
Score = 27.1 bits (57), Expect = 8.3
Identities = 18/57 (31%), Positives = 29/57 (50%)
Frame = -2
Query: 217 LAEESVERIVSTPDGLVCGHLAIRLDAVLQAVKLPAGITDLDSGLANVYRDALTHFD 47
+A+ V R V T +G + +DA++QA KLP I + G+ + D + FD
Sbjct: 250 IADGQVTRSVDTENGQLSPQEQKTVDAIVQASKLPLSIVLV--GVGDGPWDMMREFD 304
>At5g14420.1 68418.m01684 copine-related low similarity to SP|Q99829
Copine I {Homo sapiens}
Length = 468
Score = 27.1 bits (57), Expect = 8.3
Identities = 18/57 (31%), Positives = 29/57 (50%)
Frame = -2
Query: 217 LAEESVERIVSTPDGLVCGHLAIRLDAVLQAVKLPAGITDLDSGLANVYRDALTHFD 47
+A+ V R V T +G + +DA++QA KLP I + G+ + D + FD
Sbjct: 250 IADGQVTRSVDTENGQLSPQEQKTVDAIVQASKLPLSIVLV--GVGDGPWDMMREFD 304
>At4g31670.1 68417.m04497 ubiquitin carboxyl-terminal hydrolase
family protein / zinc finger (MYND type) family protein
similar to ubiquitin-specific protease 15 (UBP15)
[Arabidopsis thaliana] GI:11993475; contains Pfam
profiles PF00443: Ubiquitin carboxyl-terminal hydrolase,
PF01753: MYND finger
Length = 631
Score = 27.1 bits (57), Expect = 8.3
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -1
Query: 164 WASGHQAGCRAPGSKAPSRHYRSGLR 87
W+SGHQ CR G + ++GLR
Sbjct: 90 WSSGHQRNCRDYGITTLTPSAKNGLR 115
>At2g40070.1 68415.m04923 expressed protein
Length = 607
Score = 27.1 bits (57), Expect = 8.3
Identities = 22/75 (29%), Positives = 37/75 (49%), Gaps = 1/75 (1%)
Frame = +3
Query: 33 RKKLKSKCVSASLYTLAKPESRSVMPAGSFTAWSTASSLMARCPQTRPSGVETILSTLSS 212
R++ S +S+S +P S + T +S+L A +RPS T +T+SS
Sbjct: 158 RQQTSSPGLSSSSGASRRPSSSGGPGSRPATPTGRSSTLTANSKSSRPS-TPTSRATVSS 216
Query: 213 A-RPELASTXPVLSS 254
A RP L ++ +S+
Sbjct: 217 ATRPSLTNSRSTVSA 231
>At1g52160.1 68414.m05887 metallo-beta-lactamase family protein
Length = 890
Score = 27.1 bits (57), Expect = 8.3
Identities = 22/72 (30%), Positives = 32/72 (44%), Gaps = 4/72 (5%)
Frame = -2
Query: 253 EDSTGXVLASSGLAEESVERIVSTPDGLVCGHLAIRLDAVLQAVKLPAGITD---LDSG- 86
E G + SG + E + ++ D + H A DA+++ T +D G
Sbjct: 750 EQILGWKMVYSGDSRPCPETVEASRDATILIHEATFEDALIEEALAKNHSTTKEAIDVGS 809
Query: 85 LANVYRDALTHF 50
ANVYR LTHF
Sbjct: 810 AANVYRIVLTHF 821
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,818,006
Number of Sequences: 28952
Number of extensions: 223727
Number of successful extensions: 721
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 671
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 715
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1033331880
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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