BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= msgV0286.Seq (499 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPAC5D6.01 |rps2202|rps22-2, rps15a-2|40S ribosomal protein S15a... 108 4e-25 SPAC22A12.04c |rps2201|rps22-1, rps15a-1|40S ribosomal protein S... 108 4e-25 SPBC3B9.16c |nup120||nucleoporin Nup120|Schizosaccharomyces pomb... 26 3.6 SPAC890.04c |||ribosome biogenesis protein Ytm1 |Schizosaccharom... 25 4.8 SPBC16E9.10c |||AAA family ATPase Rix7 |Schizosaccharomyces pomb... 25 8.4 >SPAC5D6.01 |rps2202|rps22-2, rps15a-2|40S ribosomal protein S15a|Schizosaccharomyces pombe|chr 1|||Manual Length = 130 Score = 108 bits (260), Expect = 4e-25 Identities = 51/71 (71%), Positives = 59/71 (83%) Frame = +3 Query: 42 MVRMNVLSDALKSIHNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGYIGEFEIXDDHRAGK 221 MVR +VL+D L +I NAE+RG+RQVLIRP SKVIVKFLTVM KHGYI EF DDHR+GK Sbjct: 1 MVRQSVLADCLNNIVNAERRGRRQVLIRPSSKVIVKFLTVMQKHGYIDEFTEIDDHRSGK 60 Query: 222 IVVNLTGRLNK 254 IV+ L GR+NK Sbjct: 61 IVIQLNGRINK 71 Score = 81.8 bits (193), Expect = 5e-17 Identities = 39/58 (67%), Positives = 44/58 (75%), Gaps = 1/58 (1%) Frame = +2 Query: 257 GVISPRFDVPINDIERWTN-LLPSRQFGYLVLTTSGGIMDHEEARRKHLGGKXLGXFF 427 GVISPRF+V + DIE+W N LLPSRQ G +VLTTS GIM H EAR K GGK LG F+ Sbjct: 73 GVISPRFNVKLKDIEKWVNQLLPSRQVGVIVLTTSRGIMSHNEARAKDAGGKILGFFY 130 >SPAC22A12.04c |rps2201|rps22-1, rps15a-1|40S ribosomal protein S15a|Schizosaccharomyces pombe|chr 1|||Manual Length = 130 Score = 108 bits (260), Expect = 4e-25 Identities = 51/71 (71%), Positives = 59/71 (83%) Frame = +3 Query: 42 MVRMNVLSDALKSIHNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGYIGEFEIXDDHRAGK 221 MVR +VL+D L +I NAE+RG+RQVLIRP SKVIVKFLTVM KHGYI EF DDHR+GK Sbjct: 1 MVRQSVLADCLNNIVNAERRGRRQVLIRPSSKVIVKFLTVMQKHGYIDEFTEIDDHRSGK 60 Query: 222 IVVNLTGRLNK 254 IV+ L GR+NK Sbjct: 61 IVIQLNGRINK 71 Score = 81.8 bits (193), Expect = 5e-17 Identities = 39/58 (67%), Positives = 44/58 (75%), Gaps = 1/58 (1%) Frame = +2 Query: 257 GVISPRFDVPINDIERWTN-LLPSRQFGYLVLTTSGGIMDHEEARRKHLGGKXLGXFF 427 GVISPRF+V + DIE+W N LLPSRQ G +VLTTS GIM H EAR K GGK LG F+ Sbjct: 73 GVISPRFNVKLKDIEKWVNQLLPSRQVGVIVLTTSRGIMSHNEARAKDAGGKILGFFY 130 >SPBC3B9.16c |nup120||nucleoporin Nup120|Schizosaccharomyces pombe|chr 2|||Manual Length = 1136 Score = 25.8 bits (54), Expect = 3.6 Identities = 10/31 (32%), Positives = 19/31 (61%) Frame = +3 Query: 228 VNLTGRLNKVVSFHLVLMFPSTILKDGLICS 320 V+L + + F++ + FPS ++KDG+ S Sbjct: 88 VSLNSKKEPLSKFNVKIHFPSNVMKDGVAFS 118 >SPAC890.04c |||ribosome biogenesis protein Ytm1 |Schizosaccharomyces pombe|chr 1|||Manual Length = 440 Score = 25.4 bits (53), Expect = 4.8 Identities = 11/30 (36%), Positives = 17/30 (56%) Frame = +3 Query: 321 PHDSLVT*SLQQVVASWTMKKPEENTLEEK 410 P+ S +T SL Q + W +++PE EK Sbjct: 154 PNQSFLTASLDQKIFHWVIEEPESMLDAEK 183 >SPBC16E9.10c |||AAA family ATPase Rix7 |Schizosaccharomyces pombe|chr 2|||Manual Length = 779 Score = 24.6 bits (51), Expect = 8.4 Identities = 14/47 (29%), Positives = 21/47 (44%) Frame = -1 Query: 175 PCFIITVKNLTMTLEQGLMRTCLFPRFSALCIDFKASLNTFIRTMAK 35 P +I N +L+ L R F R L + + + +RTMAK Sbjct: 314 PVLVIGATNRPDSLDSALRRAGRFDREICLTVPSQDAREKILRTMAK 360 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 1,627,758 Number of Sequences: 5004 Number of extensions: 28669 Number of successful extensions: 65 Number of sequences better than 10.0: 5 Number of HSP's better than 10.0 without gapping: 61 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 63 length of database: 2,362,478 effective HSP length: 68 effective length of database: 2,022,206 effective search space used: 196153982 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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