Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0286.Seq
         (499 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0762 - 5852168-5852266,5852409-5852569,5852691-5852823          120   5e-28
02_03_0219 + 16541350-16541482,16541605-16541765,16541863-165419...   120   9e-28
02_02_0303 - 8766264-8766362,8767112-8767272,8768160-8768289           73   1e-13
01_01_0365 - 2859617-2859722,2860047-2860489,2862232-2862391,286...    31   0.51 

>07_01_0762 - 5852168-5852266,5852409-5852569,5852691-5852823
          Length = 130

 Score =  120 bits (290), Expect = 5e-28
 Identities = 56/71 (78%), Positives = 64/71 (90%)
 Frame = +3

Query: 42  MVRMNVLSDALKSIHNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGYIGEFEIXDDHRAGK 221
           MVR++VL+DALK+++NAEKRGKRQVLIRP SKVI+KFL VM KHGYIGEFE  DDHR+GK
Sbjct: 1   MVRVSVLNDALKTMYNAEKRGKRQVLIRPSSKVIIKFLIVMQKHGYIGEFEFVDDHRSGK 60

Query: 222 IVVNLTGRLNK 254
           IVV L GRLNK
Sbjct: 61  IVVELNGRLNK 71



 Score = 95.9 bits (228), Expect = 2e-20
 Identities = 44/58 (75%), Positives = 50/58 (86%), Gaps = 1/58 (1%)
 Frame = +2

Query: 257 GVISPRFDVPINDIERWT-NLLPSRQFGYLVLTTSGGIMDHEEARRKHLGGKXLGXFF 427
           GVISPRFDV + +IE WT  LLPSRQFGY+VLTTS GIMDHEEARRK++GGK LG F+
Sbjct: 73  GVISPRFDVGVKEIESWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 130


>02_03_0219 +
           16541350-16541482,16541605-16541765,16541863-16541940,
           16543176-16543445
          Length = 213

 Score =  120 bits (288), Expect = 9e-28
 Identities = 55/71 (77%), Positives = 64/71 (90%)
 Frame = +3

Query: 42  MVRMNVLSDALKSIHNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGYIGEFEIXDDHRAGK 221
           MVR++VL+DALK+++NAEKRGKRQV+IRP SKVI+KFL VM KHGYIGEFE  DDHR+GK
Sbjct: 1   MVRVSVLNDALKTMYNAEKRGKRQVMIRPSSKVIIKFLIVMQKHGYIGEFEFVDDHRSGK 60

Query: 222 IVVNLTGRLNK 254
           IVV L GRLNK
Sbjct: 61  IVVELNGRLNK 71



 Score = 90.2 bits (214), Expect = 8e-19
 Identities = 42/54 (77%), Positives = 47/54 (87%), Gaps = 1/54 (1%)
 Frame = +2

Query: 257 GVISPRFDVPINDIERWT-NLLPSRQFGYLVLTTSGGIMDHEEARRKHLGGKXL 415
           GVISPRFDV + +IE WT  LLPSRQFGY+VLTTS GIMDHEEARRK++GGK L
Sbjct: 73  GVISPRFDVGVKEIESWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKEL 126


>02_02_0303 - 8766264-8766362,8767112-8767272,8768160-8768289
          Length = 129

 Score = 73.3 bits (172), Expect = 1e-13
 Identities = 33/64 (51%), Positives = 46/64 (71%)
 Frame = +3

Query: 57  VLSDALKSIHNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGYIGEFEIXDDHRAGKIVVNL 236
           +L+DAL+++ NAE+RGK   L++P S V+V FL +M   GYI +FE+ D HR GKI V L
Sbjct: 5   ILNDALRTMVNAERRGKATALLQPISGVMVSFLNIMKHRGYIKKFEVIDPHRVGKINVEL 64

Query: 237 TGRL 248
            GR+
Sbjct: 65  HGRI 68



 Score = 60.1 bits (139), Expect = 1e-09
 Identities = 26/64 (40%), Positives = 45/64 (70%), Gaps = 1/64 (1%)
 Frame = +2

Query: 236 HRQTKQGGVISPRFDVPINDIERW-TNLLPSRQFGYLVLTTSGGIMDHEEARRKHLGGKX 412
           H + K    ++ R D+   +IE++   +LP+RQ+GY+V+TT  G++DHEEA ++++GG+ 
Sbjct: 65  HGRIKDCKALTYRQDIRAKEIEQYRVRMLPTRQWGYVVITTPNGVLDHEEAIKQNVGGQV 124

Query: 413 LGXF 424
           LG F
Sbjct: 125 LGYF 128


>01_01_0365 -
           2859617-2859722,2860047-2860489,2862232-2862391,
           2863431-2863516,2863648-2866272
          Length = 1139

 Score = 31.1 bits (67), Expect = 0.51
 Identities = 13/24 (54%), Positives = 19/24 (79%), Gaps = 2/24 (8%)
 Frame = +3

Query: 201 DDHRAGKIVVNLTGRLNK--VVSF 266
           DDH++G+I++   GRLNK  V+SF
Sbjct: 913 DDHKSGEIILEFDGRLNKWGVISF 936


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,757,128
Number of Sequences: 37544
Number of extensions: 198128
Number of successful extensions: 359
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 353
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 357
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1047416480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)