Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0286.Seq
         (499 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_35685| Best HMM Match : Ribosomal_S8 (HMM E-Value=0.08)             76   2e-14
SB_23248| Best HMM Match : No HMM Matches (HMM E-Value=.)              46   1e-05
SB_50281| Best HMM Match : Utp21 (HMM E-Value=1.1)                     28   3.7  
SB_54474| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.6  
SB_51549| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.6  

>SB_35685| Best HMM Match : Ribosomal_S8 (HMM E-Value=0.08)
          Length = 120

 Score = 75.8 bits (178), Expect = 2e-14
 Identities = 38/44 (86%), Positives = 40/44 (90%)
 Frame = +3

Query: 42  MVRMNVLSDALKSIHNAEKRGKRQVLIRPCSKVIVKFLTVMMKH 173
           MVR+NVL+DAL SI NAEKRGKRQV IRP SKVIVKFLTVMMKH
Sbjct: 1   MVRVNVLNDALVSICNAEKRGKRQVQIRPSSKVIVKFLTVMMKH 44


>SB_23248| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 29

 Score = 46.4 bits (105), Expect = 1e-05
 Identities = 21/27 (77%), Positives = 24/27 (88%), Gaps = 1/27 (3%)
 Frame = +2

Query: 257 GVISPRFDVPINDIERW-TNLLPSRQF 334
           GVISPRFDV + DIE+W +NLLPSRQF
Sbjct: 2   GVISPRFDVGVRDIEQWASNLLPSRQF 28


>SB_50281| Best HMM Match : Utp21 (HMM E-Value=1.1)
          Length = 549

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 13/30 (43%), Positives = 20/30 (66%)
 Frame = +2

Query: 254 GGVISPRFDVPINDIERWTNLLPSRQFGYL 343
           G  ISP F VP  D ++ ++L+PS+Q  +L
Sbjct: 378 GEFISPIFTVPKKDGKKKSSLIPSQQITFL 407


>SB_54474| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 60

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
 Frame = +3

Query: 75  KSIHNAEKRGKRQVLIRPCSKVIVKFL--TVMMKHGYIGEFEI 197
           K+IHN   RGKR  +++    V   F   TV+M++G    F++
Sbjct: 17  KNIHNVNVRGKRGNIVQVYPAVEYDFTPNTVLMRNGDYVHFQL 59


>SB_51549| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 630

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 15/48 (31%), Positives = 22/48 (45%), Gaps = 2/48 (4%)
 Frame = +2

Query: 218 QDCCKSHRQTKQGGVISPRF--DVPINDIERWTNLLPSRQFGYLVLTT 355
           +D C  H  +  G + SP F  D P N    WT  +P  ++  L+  T
Sbjct: 530 EDSCIFHTNSTSGSIRSPNFPRDYPHNAECTWTITVPRGRYVKLMFGT 577


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,197,479
Number of Sequences: 59808
Number of extensions: 229246
Number of successful extensions: 368
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 352
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 367
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1075029208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)