BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= msgV0286.Seq (499 letters) Database: nematostella 59,808 sequences; 16,821,457 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SB_35685| Best HMM Match : Ribosomal_S8 (HMM E-Value=0.08) 76 2e-14 SB_23248| Best HMM Match : No HMM Matches (HMM E-Value=.) 46 1e-05 SB_50281| Best HMM Match : Utp21 (HMM E-Value=1.1) 28 3.7 SB_54474| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.6 SB_51549| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.6 >SB_35685| Best HMM Match : Ribosomal_S8 (HMM E-Value=0.08) Length = 120 Score = 75.8 bits (178), Expect = 2e-14 Identities = 38/44 (86%), Positives = 40/44 (90%) Frame = +3 Query: 42 MVRMNVLSDALKSIHNAEKRGKRQVLIRPCSKVIVKFLTVMMKH 173 MVR+NVL+DAL SI NAEKRGKRQV IRP SKVIVKFLTVMMKH Sbjct: 1 MVRVNVLNDALVSICNAEKRGKRQVQIRPSSKVIVKFLTVMMKH 44 >SB_23248| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 29 Score = 46.4 bits (105), Expect = 1e-05 Identities = 21/27 (77%), Positives = 24/27 (88%), Gaps = 1/27 (3%) Frame = +2 Query: 257 GVISPRFDVPINDIERW-TNLLPSRQF 334 GVISPRFDV + DIE+W +NLLPSRQF Sbjct: 2 GVISPRFDVGVRDIEQWASNLLPSRQF 28 >SB_50281| Best HMM Match : Utp21 (HMM E-Value=1.1) Length = 549 Score = 28.3 bits (60), Expect = 3.7 Identities = 13/30 (43%), Positives = 20/30 (66%) Frame = +2 Query: 254 GGVISPRFDVPINDIERWTNLLPSRQFGYL 343 G ISP F VP D ++ ++L+PS+Q +L Sbjct: 378 GEFISPIFTVPKKDGKKKSSLIPSQQITFL 407 >SB_54474| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 60 Score = 27.1 bits (57), Expect = 8.6 Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 2/43 (4%) Frame = +3 Query: 75 KSIHNAEKRGKRQVLIRPCSKVIVKFL--TVMMKHGYIGEFEI 197 K+IHN RGKR +++ V F TV+M++G F++ Sbjct: 17 KNIHNVNVRGKRGNIVQVYPAVEYDFTPNTVLMRNGDYVHFQL 59 >SB_51549| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 630 Score = 27.1 bits (57), Expect = 8.6 Identities = 15/48 (31%), Positives = 22/48 (45%), Gaps = 2/48 (4%) Frame = +2 Query: 218 QDCCKSHRQTKQGGVISPRF--DVPINDIERWTNLLPSRQFGYLVLTT 355 +D C H + G + SP F D P N WT +P ++ L+ T Sbjct: 530 EDSCIFHTNSTSGSIRSPNFPRDYPHNAECTWTITVPRGRYVKLMFGT 577 Database: nematostella Posted date: Oct 22, 2007 1:22 PM Number of letters in database: 16,821,457 Number of sequences in database: 59,808 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 12,197,479 Number of Sequences: 59808 Number of extensions: 229246 Number of successful extensions: 368 Number of sequences better than 10.0: 5 Number of HSP's better than 10.0 without gapping: 352 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 367 length of database: 16,821,457 effective HSP length: 77 effective length of database: 12,216,241 effective search space used: 1075029208 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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