Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0286.Seq
         (499 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF025460-6|AAB70989.1|  130|Caenorhabditis elegans Ribosomal pro...   134   3e-32
U00032-8|AAA50632.2| 1163|Caenorhabditis elegans Hypothetical pr...    29   2.5  
Z81066-3|CAI46608.1|  363|Caenorhabditis elegans Hypothetical pr...    27   5.7  
U41547-3|AAA83193.2|  145|Caenorhabditis elegans Hypothetical pr...    27   7.6  
U23515-1|AAK21454.2|  511|Caenorhabditis elegans Hypothetical pr...    27   10.0 

>AF025460-6|AAB70989.1|  130|Caenorhabditis elegans Ribosomal
           protein, small subunitprotein 22 protein.
          Length = 130

 Score =  134 bits (324), Expect = 3e-32
 Identities = 64/71 (90%), Positives = 68/71 (95%)
 Frame = +3

Query: 42  MVRMNVLSDALKSIHNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGYIGEFEIXDDHRAGK 221
           MVRMNVL+DAL +I+NAEKRGKRQVLIRP SKVIV+FLTVMMKHGYIGEFEI DDHRAGK
Sbjct: 1   MVRMNVLADALNAINNAEKRGKRQVLIRPASKVIVRFLTVMMKHGYIGEFEIVDDHRAGK 60

Query: 222 IVVNLTGRLNK 254
           IVVNLTGRLNK
Sbjct: 61  IVVNLTGRLNK 71



 Score = 97.5 bits (232), Expect = 5e-21
 Identities = 44/60 (73%), Positives = 52/60 (86%), Gaps = 1/60 (1%)
 Frame = +2

Query: 251 QGGVISPRFDVPINDIERWTN-LLPSRQFGYLVLTTSGGIMDHEEARRKHLGGKXLGXFF 427
           +  VISPR ++ +ND+E++TN LLPSRQFGYL+LTTS GIMDHEEARRKHLGGK LG FF
Sbjct: 71  KASVISPRLNIRLNDLEKYTNTLLPSRQFGYLILTTSAGIMDHEEARRKHLGGKILGFFF 130


>U00032-8|AAA50632.2| 1163|Caenorhabditis elegans Hypothetical protein
            F37A4.4 protein.
          Length = 1163

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 21/62 (33%), Positives = 29/62 (46%), Gaps = 2/62 (3%)
 Frame = +3

Query: 54   NVLSDALKSIH--NAEKRGKRQVLIRPCSKVIVKFLTVMMKHGYIGEFEIXDDHRAGKIV 227
            NVL D+++ I+  N  K  KR   I  C+K     L V  + GY    EI   H A +  
Sbjct: 826  NVLIDSVREINATNLLKAVKRGAYINVCNKYGNTALHVATRRGYQNLVEILIKHGADRSF 885

Query: 228  VN 233
            +N
Sbjct: 886  LN 887


>Z81066-3|CAI46608.1|  363|Caenorhabditis elegans Hypothetical
           protein F17B5.6 protein.
          Length = 363

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 9/14 (64%), Positives = 10/14 (71%), Gaps = 1/14 (7%)
 Frame = +1

Query: 325 TTVWL-PSPYNKWW 363
           T +WL P PYN WW
Sbjct: 29  TVIWLIPRPYNYWW 42


>U41547-3|AAA83193.2|  145|Caenorhabditis elegans Hypothetical
           protein F22A3.2 protein.
          Length = 145

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 14/48 (29%), Positives = 27/48 (56%)
 Frame = -3

Query: 254 LV*SACEIYNNLASSVIIXDFKLSDVTVLHHHC*KLNDDFGTGPDEDL 111
           +V +A E ++   +  +   F+  +V V +     ++DDFG+ PD+DL
Sbjct: 15  VVLAASESHSGRQNYRVKGAFRCGNVPVKNVQVKLIDDDFGSDPDDDL 62


>U23515-1|AAK21454.2|  511|Caenorhabditis elegans Hypothetical
           protein R144.5 protein.
          Length = 511

 Score = 26.6 bits (56), Expect = 10.0
 Identities = 16/65 (24%), Positives = 28/65 (43%)
 Frame = +2

Query: 254 GGVISPRFDVPINDIERWTNLLPSRQFGYLVLTTSGGIMDHEEARRKHLGGKXLGXFF*A 433
           GG++  R +     + RW N+L   +      T  G ++     +RK    + L  F  A
Sbjct: 382 GGLLCNRNET--GKLARWRNVLDMNRSALKTFTYDGSLLAGLNKKRKFPSDRSLVLFIIA 439

Query: 434 YLIHV 448
           YL ++
Sbjct: 440 YLTNI 444


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,016,595
Number of Sequences: 27780
Number of extensions: 161746
Number of successful extensions: 326
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 322
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 325
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 945973702
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)