Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0286.Seq
(499 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g59850.1 68418.m07505 40S ribosomal protein S15A (RPS15aF) cy... 120 4e-28
At1g07770.2 68414.m00839 40S ribosomal protein S15A (RPS15aA) id... 120 4e-28
At1g07770.1 68414.m00838 40S ribosomal protein S15A (RPS15aA) id... 120 4e-28
At3g46040.1 68416.m04981 40S ribosomal protein S15A (RPS15aD) cy... 119 1e-27
At2g39590.1 68415.m04856 40S ribosomal protein S15A (RPS15aC) 113 6e-26
At2g19720.1 68415.m02304 40S ribosomal protein S15A (RPS15aB) 75 4e-14
At4g29430.1 68417.m04202 40S ribosomal protein S15A (RPS15aE) ri... 73 8e-14
At2g01890.2 68415.m00123 purple acid phosphatase, putative conta... 27 5.3
At2g01890.1 68415.m00122 purple acid phosphatase, putative conta... 27 5.3
>At5g59850.1 68418.m07505 40S ribosomal protein S15A (RPS15aF)
cytoplasmic ribosomal protein S15a, Arabidopsis
thaliana, EMBL:ATAF1412
Length = 130
Score = 120 bits (290), Expect = 4e-28
Identities = 56/71 (78%), Positives = 64/71 (90%)
Frame = +3
Query: 42 MVRMNVLSDALKSIHNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGYIGEFEIXDDHRAGK 221
MVR++VL+DALKS++NAEKRGKRQV+IRP SKVI+KFL VM KHGYIGEFE DDHR+GK
Sbjct: 1 MVRISVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLIVMQKHGYIGEFEYVDDHRSGK 60
Query: 222 IVVNLTGRLNK 254
IVV L GRLNK
Sbjct: 61 IVVELNGRLNK 71
Score = 95.5 bits (227), Expect = 2e-20
Identities = 44/58 (75%), Positives = 50/58 (86%), Gaps = 1/58 (1%)
Frame = +2
Query: 257 GVISPRFDVPINDIERWT-NLLPSRQFGYLVLTTSGGIMDHEEARRKHLGGKXLGXFF 427
GVISPRFDV + +IE WT LLPSRQFGY+VLTTS GIMDHEEARRK++GGK LG F+
Sbjct: 73 GVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 130
>At1g07770.2 68414.m00839 40S ribosomal protein S15A (RPS15aA)
identical to GB:AAA61608 from [Arabidopsis thaliana]
(Plant Physiol. 106 (1), 401-402 (1994))
Length = 130
Score = 120 bits (290), Expect = 4e-28
Identities = 56/71 (78%), Positives = 64/71 (90%)
Frame = +3
Query: 42 MVRMNVLSDALKSIHNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGYIGEFEIXDDHRAGK 221
MVR++VL+DALKS++NAEKRGKRQV+IRP SKVI+KFL VM KHGYIGEFE DDHR+GK
Sbjct: 1 MVRISVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLIVMQKHGYIGEFEYVDDHRSGK 60
Query: 222 IVVNLTGRLNK 254
IVV L GRLNK
Sbjct: 61 IVVELNGRLNK 71
Score = 95.5 bits (227), Expect = 2e-20
Identities = 44/58 (75%), Positives = 50/58 (86%), Gaps = 1/58 (1%)
Frame = +2
Query: 257 GVISPRFDVPINDIERWT-NLLPSRQFGYLVLTTSGGIMDHEEARRKHLGGKXLGXFF 427
GVISPRFDV + +IE WT LLPSRQFGY+VLTTS GIMDHEEARRK++GGK LG F+
Sbjct: 73 GVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 130
>At1g07770.1 68414.m00838 40S ribosomal protein S15A (RPS15aA)
identical to GB:AAA61608 from [Arabidopsis thaliana]
(Plant Physiol. 106 (1), 401-402 (1994))
Length = 130
Score = 120 bits (290), Expect = 4e-28
Identities = 56/71 (78%), Positives = 64/71 (90%)
Frame = +3
Query: 42 MVRMNVLSDALKSIHNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGYIGEFEIXDDHRAGK 221
MVR++VL+DALKS++NAEKRGKRQV+IRP SKVI+KFL VM KHGYIGEFE DDHR+GK
Sbjct: 1 MVRISVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLIVMQKHGYIGEFEYVDDHRSGK 60
Query: 222 IVVNLTGRLNK 254
IVV L GRLNK
Sbjct: 61 IVVELNGRLNK 71
Score = 95.5 bits (227), Expect = 2e-20
Identities = 44/58 (75%), Positives = 50/58 (86%), Gaps = 1/58 (1%)
Frame = +2
Query: 257 GVISPRFDVPINDIERWT-NLLPSRQFGYLVLTTSGGIMDHEEARRKHLGGKXLGXFF 427
GVISPRFDV + +IE WT LLPSRQFGY+VLTTS GIMDHEEARRK++GGK LG F+
Sbjct: 73 GVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 130
>At3g46040.1 68416.m04981 40S ribosomal protein S15A (RPS15aD)
cytoplasmic ribosomal protein S15a, Arabidopsis
thaliana, EMBL:ATAF1412
Length = 130
Score = 119 bits (286), Expect = 1e-27
Identities = 55/71 (77%), Positives = 63/71 (88%)
Frame = +3
Query: 42 MVRMNVLSDALKSIHNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGYIGEFEIXDDHRAGK 221
MVR++VL+D LKS++NAEKRGKRQV+IRP SKVI+KFL VM KHGYIGEFE DDHR+GK
Sbjct: 1 MVRISVLNDGLKSMYNAEKRGKRQVMIRPSSKVIIKFLIVMQKHGYIGEFEYVDDHRSGK 60
Query: 222 IVVNLTGRLNK 254
IVV L GRLNK
Sbjct: 61 IVVELNGRLNK 71
Score = 93.9 bits (223), Expect = 5e-20
Identities = 43/58 (74%), Positives = 50/58 (86%), Gaps = 1/58 (1%)
Frame = +2
Query: 257 GVISPRFDVPINDIERWT-NLLPSRQFGYLVLTTSGGIMDHEEARRKHLGGKXLGXFF 427
GVISPRFDV + +IE WT LLPSRQFG++VLTTS GIMDHEEARRK++GGK LG F+
Sbjct: 73 GVISPRFDVGVKEIEGWTARLLPSRQFGFIVLTTSAGIMDHEEARRKNVGGKVLGFFY 130
>At2g39590.1 68415.m04856 40S ribosomal protein S15A (RPS15aC)
Length = 136
Score = 113 bits (272), Expect = 6e-26
Identities = 53/70 (75%), Positives = 60/70 (85%)
Frame = +3
Query: 42 MVRMNVLSDALKSIHNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGYIGEFEIXDDHRAGK 221
MVR +VL+D LKS+ NAEK+GKRQV+IRP SKVI+KFLTVM KHGYI EFE DDHR+GK
Sbjct: 7 MVRASVLNDCLKSMSNAEKQGKRQVMIRPSSKVIIKFLTVMQKHGYIAEFEYVDDHRSGK 66
Query: 222 IVVNLTGRLN 251
IVV L GRLN
Sbjct: 67 IVVELNGRLN 76
Score = 91.9 bits (218), Expect = 2e-19
Identities = 41/58 (70%), Positives = 50/58 (86%), Gaps = 1/58 (1%)
Frame = +2
Query: 257 GVISPRFDVPINDIERWT-NLLPSRQFGYLVLTTSGGIMDHEEARRKHLGGKXLGXFF 427
GVISPR+D+ + +IE WT LLPSRQFGY+VLTTS GIMDHEEAR+K++GGK LG F+
Sbjct: 79 GVISPRYDLGVKEIEGWTAKLLPSRQFGYIVLTTSAGIMDHEEARKKNVGGKVLGFFY 136
>At2g19720.1 68415.m02304 40S ribosomal protein S15A (RPS15aB)
Length = 129
Score = 74.5 bits (175), Expect = 4e-14
Identities = 33/65 (50%), Positives = 47/65 (72%)
Frame = +3
Query: 57 VLSDALKSIHNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGYIGEFEIXDDHRAGKIVVNL 236
+L+DAL++I NAEKRGK V ++P S V+ FL +M + GYI F++ D HR G+I V+L
Sbjct: 5 ILNDALRTIVNAEKRGKASVELKPVSTVMSSFLKIMKEKGYIKNFQVHDPHRVGRITVDL 64
Query: 237 TGRLN 251
GR+N
Sbjct: 65 QGRVN 69
Score = 59.7 bits (138), Expect = 1e-09
Identities = 27/52 (51%), Positives = 40/52 (76%), Gaps = 1/52 (1%)
Frame = +2
Query: 272 RFDVPINDIERWTN-LLPSRQFGYLVLTTSGGIMDHEEARRKHLGGKXLGXF 424
R DV N+I ++T LP+RQ+GY+V+TT GI+DHEEA ++++GG+ LG F
Sbjct: 77 RQDVKANEIGQYTERTLPTRQWGYIVITTPDGILDHEEAIKRNVGGQVLGFF 128
>At4g29430.1 68417.m04202 40S ribosomal protein S15A (RPS15aE)
ribosomal protein S15a - Brassica napus,PIR2:S20945
Length = 129
Score = 73.3 bits (172), Expect = 8e-14
Identities = 32/65 (49%), Positives = 47/65 (72%)
Frame = +3
Query: 57 VLSDALKSIHNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGYIGEFEIXDDHRAGKIVVNL 236
+L+DAL++I NAE+RGK V ++P S V+ FL +M + GYI F++ D HR G+I V+L
Sbjct: 5 ILNDALRTIVNAERRGKASVELKPISTVMSSFLRIMKEKGYIKNFQVYDPHRVGRITVDL 64
Query: 237 TGRLN 251
GR+N
Sbjct: 65 QGRVN 69
Score = 60.9 bits (141), Expect = 5e-10
Identities = 27/53 (50%), Positives = 41/53 (77%), Gaps = 1/53 (1%)
Frame = +2
Query: 272 RFDVPINDIERWTN-LLPSRQFGYLVLTTSGGIMDHEEARRKHLGGKXLGXFF 427
R DV +IE++T LP+RQ+GY+V+TT GI+DHEEA ++++GG+ LG F+
Sbjct: 77 RQDVRAKEIEKYTERTLPTRQWGYVVITTPDGILDHEEAIKRNVGGQVLGFFY 129
>At2g01890.2 68415.m00123 purple acid phosphatase, putative contains
Pfam profile: PF00149 calcineurin-like phosphoesterase;
identical to purple acid phosphatase (GI:20257479)
[Arabidopsis thaliana];
Length = 307
Score = 27.5 bits (58), Expect = 5.3
Identities = 15/74 (20%), Positives = 36/74 (48%)
Frame = +3
Query: 180 IGEFEIXDDHRAGKIVVNLTGRLNKVVSFHLVLMFPSTILKDGLICSPHDSLVT*SLQQV 359
+G++ + ++ + + G++ K ++ ++ DG+I SP+DS S +
Sbjct: 50 VGDWGRRGSYNQSQVALQM-GKIGKDLNIDFLISTGDNFYDDGII-SPYDSQFQDSFTNI 107
Query: 360 VASWTMKKPEENTL 401
+ +++KP N L
Sbjct: 108 YTATSLQKPWYNVL 121
>At2g01890.1 68415.m00122 purple acid phosphatase, putative contains
Pfam profile: PF00149 calcineurin-like phosphoesterase;
identical to purple acid phosphatase (GI:20257479)
[Arabidopsis thaliana];
Length = 335
Score = 27.5 bits (58), Expect = 5.3
Identities = 15/74 (20%), Positives = 36/74 (48%)
Frame = +3
Query: 180 IGEFEIXDDHRAGKIVVNLTGRLNKVVSFHLVLMFPSTILKDGLICSPHDSLVT*SLQQV 359
+G++ + ++ + + G++ K ++ ++ DG+I SP+DS S +
Sbjct: 50 VGDWGRRGSYNQSQVALQM-GKIGKDLNIDFLISTGDNFYDDGII-SPYDSQFQDSFTNI 107
Query: 360 VASWTMKKPEENTL 401
+ +++KP N L
Sbjct: 108 YTATSLQKPWYNVL 121
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,605,325
Number of Sequences: 28952
Number of extensions: 156940
Number of successful extensions: 297
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 276
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 292
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 878448512
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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