Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0285.Seq
         (429 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ606487-1|CAE55183.1|  203|Tribolium castaneum Giant protein pr...    25   0.31 
AM292377-1|CAL23189.2|  358|Tribolium castaneum gustatory recept...    21   3.8  
AM292342-1|CAL23154.2|  386|Tribolium castaneum gustatory recept...    21   3.8  

>AJ606487-1|CAE55183.1|  203|Tribolium castaneum Giant protein
           protein.
          Length = 203

 Score = 25.0 bits (52), Expect = 0.31
 Identities = 16/64 (25%), Positives = 27/64 (42%)
 Frame = -2

Query: 242 RRSRXKEQNXNXATRYRQXKKX*VXVLLKEEQTLRQRHTELGEKCSDLQREIRYLKALMR 63
           RR     QN N    Y + ++       +     R +  E+  +C+ L+RE  +LK +  
Sbjct: 123 RRLSTTTQNKNDDPSYWEKRRKNNEAAKRSRDARRAKEDEIAIRCAFLERENCHLKFVTD 182

Query: 62  DLFK 51
            L K
Sbjct: 183 TLKK 186


>AM292377-1|CAL23189.2|  358|Tribolium castaneum gustatory receptor
           candidate 56 protein.
          Length = 358

 Score = 21.4 bits (43), Expect = 3.8
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = -2

Query: 113 KCSDLQREIRYLKALMRDLFKAKGLI 36
           K SDLQ+++RY + +   L     +I
Sbjct: 80  KDSDLQQKLRYFEEVFSSLLSCCSVI 105


>AM292342-1|CAL23154.2|  386|Tribolium castaneum gustatory receptor
           candidate 21 protein.
          Length = 386

 Score = 21.4 bits (43), Expect = 3.8
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = -2

Query: 113 KCSDLQREIRYLKALMRDLFKAKGLI 36
           K SDLQ+++RY + +   L     +I
Sbjct: 80  KDSDLQQKLRYFEEVFSSLLSCCSVI 105


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 55,576
Number of Sequences: 336
Number of extensions: 611
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 122,585
effective HSP length: 52
effective length of database: 105,113
effective search space used:  9460170
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)