Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0285.Seq
         (429 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC21E11.03c |pcr1|mts2|transcription factor Pcr1|Schizosacchar...    30   0.13 
SPAC16E8.13 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ...    29   0.23 
SPAC607.08c |||DUF726 family protein|Schizosaccharomyces pombe|c...    28   0.53 
SPCC777.02 |||transcription factor |Schizosaccharomyces pombe|ch...    25   6.6  

>SPAC21E11.03c |pcr1|mts2|transcription factor
           Pcr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 171

 Score = 30.3 bits (65), Expect = 0.13
 Identities = 19/64 (29%), Positives = 32/64 (50%)
 Frame = -2

Query: 263 KTRLVDDRRSRXKEQNXNXATRYRQXKKX*VXVLLKEEQTLRQRHTELGEKCSDLQREIR 84
           K  + D++R R  E+N   A+++RQ KK  +  L +      ++   L    S LQ+E  
Sbjct: 5   KKEVDDEKRRRILERNRIAASKFRQKKKEWIKELEQTANAAFEQSKRLQLLLSQLQQEAF 64

Query: 83  YLKA 72
            LK+
Sbjct: 65  RLKS 68


>SPAC16E8.13 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 547

 Score = 29.5 bits (63), Expect = 0.23
 Identities = 21/72 (29%), Positives = 36/72 (50%)
 Frame = -2

Query: 272 SRLKTRLVDDRRSRXKEQNXNXATRYRQXKKX*VXVLLKEEQTLRQRHTELGEKCSDLQR 93
           S+LK R  DD+  R   Q  +    Y + K     +L++  QTL +++T   ++   +Q 
Sbjct: 420 SKLKKR--DDKLKRVSSQLEHLKHNYEEEKSMNENLLVRI-QTLEKQNTTKSDQIVSMQF 476

Query: 92  EIRYLKALMRDL 57
           +I  L   +RDL
Sbjct: 477 QINDLNEQLRDL 488


>SPAC607.08c |||DUF726 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 579

 Score = 28.3 bits (60), Expect = 0.53
 Identities = 14/25 (56%), Positives = 16/25 (64%)
 Frame = +3

Query: 333 VERHLHYYWNVAEMPXERLGDXPIS 407
           VE HL Y W VA++  ERLG   IS
Sbjct: 493 VEGHLQYRWLVAKILKERLGYDNIS 517


>SPCC777.02 |||transcription factor |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 632

 Score = 24.6 bits (51), Expect = 6.6
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = -2

Query: 389 EPLXWHLRNIPVV 351
           +P  WH+ N+PVV
Sbjct: 298 DPRDWHINNVPVV 310


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 985,313
Number of Sequences: 5004
Number of extensions: 11377
Number of successful extensions: 31
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 31
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 154448264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)