Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0285.Seq
         (429 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0369 - 24745140-24745510,24746005-24746089,24746746-247468...    32   0.23 
12_01_0399 + 3152219-3152721,3152995-3153127,3155013-3155097,315...    30   0.91 
07_03_1731 - 29102403-29102720,29103529-29103735,29103937-291052...    28   2.8  
04_04_1290 + 32399905-32399972,32400502-32400571,32400950-324017...    28   3.7  
03_02_0816 + 11487811-11488708,11488835-11489235                       28   3.7  
03_02_0834 - 11630288-11630500,11630531-11630623,11630844-116310...    27   4.9  
07_03_1691 - 28726307-28726323,28726588-28726953,28727483-287275...    27   8.5  
05_05_0195 + 23142830-23143714,23144288-23144314,23144657-231448...    27   8.5  

>04_04_0369 -
           24745140-24745510,24746005-24746089,24746746-24746878,
           24747764-24748584
          Length = 469

 Score = 31.9 bits (69), Expect = 0.23
 Identities = 21/66 (31%), Positives = 33/66 (50%)
 Frame = -2

Query: 254 LVDDRRSRXKEQNXNXATRYRQXKKX*VXVLLKEEQTLRQRHTELGEKCSDLQREIRYLK 75
           LVD +R++    N   A R ++ K   +  L ++ QTL+   T L  + S LQR+   L 
Sbjct: 266 LVDPKRAKRILANRQSAARSKERKMRYIAELERKVQTLQTEATTLSAQLSMLQRDTTGLT 325

Query: 74  ALMRDL 57
           +   DL
Sbjct: 326 SENSDL 331


>12_01_0399 +
           3152219-3152721,3152995-3153127,3155013-3155097,
           3155321-3155586
          Length = 328

 Score = 29.9 bits (64), Expect = 0.91
 Identities = 20/66 (30%), Positives = 33/66 (50%)
 Frame = -2

Query: 254 LVDDRRSRXKEQNXNXATRYRQXKKX*VXVLLKEEQTLRQRHTELGEKCSDLQREIRYLK 75
           L+D +R++    N   A R ++ K      L ++ QTL+   T L  + + LQR+   L 
Sbjct: 160 LIDPKRAKRILANRQSAARSKERKIKYTSELERKVQTLQTEATTLSAQLTLLQRDTSGLT 219

Query: 74  ALMRDL 57
           A  R+L
Sbjct: 220 AENREL 225


>07_03_1731 -
           29102403-29102720,29103529-29103735,29103937-29105210,
           29105298-29105734,29106370-29106764,29106921-29107051,
           29109034-29109052
          Length = 926

 Score = 28.3 bits (60), Expect = 2.8
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = -2

Query: 155 EEQTLRQRHTELGEKCSDLQREIRYLKA 72
           EE+ LR R  EL E+    QRE+ +L+A
Sbjct: 452 EEERLRDRVRELAEQNVSFQREVTFLEA 479


>04_04_1290 +
           32399905-32399972,32400502-32400571,32400950-32401734,
           32403068-32403674
          Length = 509

 Score = 27.9 bits (59), Expect = 3.7
 Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 3/38 (7%)
 Frame = -2

Query: 143 LRQRHTELGEKCSDLQREIRYL---KALMRDLFKAKGL 39
           +RQR  EL E+CS ++ EI  +   K  +  LF+  GL
Sbjct: 440 IRQRVVELEEECSSMREEIHRIGKPKGALSRLFRKLGL 477


>03_02_0816 + 11487811-11488708,11488835-11489235
          Length = 432

 Score = 27.9 bits (59), Expect = 3.7
 Identities = 13/34 (38%), Positives = 21/34 (61%)
 Frame = -1

Query: 102 PPKRDSLPKGSDA*SFQGEGSNQVNQSXTPPPEK 1
           PP  ++  KGSD   ++ +GS  V+ S +P P+K
Sbjct: 206 PPTPEATGKGSDN-RWKDDGSRDVDPSPSPTPQK 238


>03_02_0834 -
           11630288-11630500,11630531-11630623,11630844-11631050,
           11631301-11633089,11633817-11634145
          Length = 876

 Score = 27.5 bits (58), Expect = 4.9
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = -2

Query: 155 EEQTLRQRHTELGEKCSDLQREIRYLKA 72
           EEQ LR+R  EL E+    QRE+  L++
Sbjct: 412 EEQRLRERVRELAEQNVSFQREVTLLES 439


>07_03_1691 -
           28726307-28726323,28726588-28726953,28727483-28727567,
           28728255-28728387,28729793-28730328
          Length = 378

 Score = 26.6 bits (56), Expect = 8.5
 Identities = 16/60 (26%), Positives = 29/60 (48%)
 Frame = -2

Query: 251 VDDRRSRXKEQNXNXATRYRQXKKX*VXVLLKEEQTLRQRHTELGEKCSDLQREIRYLKA 72
           +D +R++    N   A R ++ K   +  L ++ QTL+   T L  + +  QR+   L A
Sbjct: 172 IDPKRAKRILANRQSAARSKERKARYITELERKVQTLQTEATTLSAQLTLFQRDTTGLSA 231


>05_05_0195 +
           23142830-23143714,23144288-23144314,23144657-23144866,
           23144976-23145242,23146290-23146376,23146495-23146553,
           23147166-23147768,23148063-23148192,23148570-23149100,
           23149636-23149743,23149911-23150456,23150957-23151079,
           23151494-23151709
          Length = 1263

 Score = 26.6 bits (56), Expect = 8.5
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = -2

Query: 152 EQTLRQRHTELGEKCSDLQREIRYLKA 72
           E  + QRH  + ++CS LQR +R L A
Sbjct: 168 EGQVMQRHDFVNQRCSALQRYLRRLAA 194


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,187,147
Number of Sequences: 37544
Number of extensions: 95839
Number of successful extensions: 163
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 162
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 163
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 802495716
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)