Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0285.Seq
         (429 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_37383| Best HMM Match : bZIP_2 (HMM E-Value=2.5e-06)                32   0.23 
SB_3656| Best HMM Match : bZIP_2 (HMM E-Value=1e-09)                   31   0.41 
SB_41031| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.54 
SB_51620| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   0.94 
SB_50760| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.2  
SB_48319| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.8  
SB_1305| Best HMM Match : Pox_A_type_inc (HMM E-Value=1.8e-11)         28   3.8  
SB_51944| Best HMM Match : LRR_1 (HMM E-Value=7.7e-34)                 28   3.8  
SB_24046| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.7  

>SB_37383| Best HMM Match : bZIP_2 (HMM E-Value=2.5e-06)
          Length = 222

 Score = 31.9 bits (69), Expect = 0.23
 Identities = 18/79 (22%), Positives = 42/79 (53%), Gaps = 1/79 (1%)
 Frame = -2

Query: 299 STDEDWSAPSRLKTRLVDDRRSRXKEQNXNXAT-RYRQXKKX*VXVLLKEEQTLRQRHTE 123
           S+ +D    + +K   +D +R   K +  N A+ R R+ ++     LLKE++   + +  
Sbjct: 136 SSGDDTDGATPVKVSKMDLQREAEKRRKNNEASKRTREKRRNKEQELLKEKEIKEKENKA 195

Query: 122 LGEKCSDLQREIRYLKALM 66
           L  +  DL+++I+ +++ +
Sbjct: 196 LRTQVEDLEKQIKDIRSAL 214


>SB_3656| Best HMM Match : bZIP_2 (HMM E-Value=1e-09)
          Length = 241

 Score = 31.1 bits (67), Expect = 0.41
 Identities = 18/74 (24%), Positives = 33/74 (44%)
 Frame = -2

Query: 287 DWSAPSRLKTRLVDDRRSRXKEQNXNXATRYRQXKKX*VXVLLKEEQTLRQRHTELGEKC 108
           D   PS   +    D+    +++N   + ++RQ +K     L  +E  L + +  L  + 
Sbjct: 163 DLLVPSPSSSSGDSDKSEEKRKRNNQASKKFRQARKGKQQALFAKESELERENYSLKVQV 222

Query: 107 SDLQREIRYLKALM 66
             L RE+  LKA +
Sbjct: 223 EQLIRELNQLKAAL 236


>SB_41031| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 184

 Score = 30.7 bits (66), Expect = 0.54
 Identities = 16/61 (26%), Positives = 34/61 (55%)
 Frame = -2

Query: 248 DDRRSRXKEQNXNXATRYRQXKKX*VXVLLKEEQTLRQRHTELGEKCSDLQREIRYLKAL 69
           ++RR   +E+N   A++ RQ +K  V  L++  + L  ++  L  + + L  EI+ L+ +
Sbjct: 98  EERRKLRRERNKVAASKCRQKRKQHVRNLVQVSEALEVQNNTLQSQITKLHDEIKQLEFM 157

Query: 68  M 66
           +
Sbjct: 158 L 158


>SB_51620| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 451

 Score = 29.9 bits (64), Expect = 0.94
 Identities = 16/43 (37%), Positives = 24/43 (55%)
 Frame = -2

Query: 248 DDRRSRXKEQNXNXATRYRQXKKX*VXVLLKEEQTLRQRHTEL 120
           D+RR +  E+N   ATR R+ +K  V  L K+   L   +T+L
Sbjct: 375 DERRRKFLERNRAAATRCREKRKIWVQQLEKKADDLSNTNTQL 417


>SB_50760| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 164

 Score = 28.7 bits (61), Expect = 2.2
 Identities = 13/43 (30%), Positives = 24/43 (55%)
 Frame = -2

Query: 140 RQRHTELGEKCSDLQREIRYLKALMRDLFKAKGLIK*INXQRR 12
           + R T+  E+ +D+Q +IR+L+  + D        K +N +RR
Sbjct: 4   KYRSTDYAERFNDIQNDIRFLRETISDFQNRFSEDKIVNTRRR 46


>SB_48319| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 965

 Score = 27.9 bits (59), Expect = 3.8
 Identities = 12/32 (37%), Positives = 23/32 (71%)
 Frame = -2

Query: 155 EEQTLRQRHTELGEKCSDLQREIRYLKALMRD 60
           ++Q  RQ+ TEL +K S+L+++I+  +  MR+
Sbjct: 799 QQQLQRQKQTELEDKQSELEKKIKSQENEMRE 830


>SB_1305| Best HMM Match : Pox_A_type_inc (HMM E-Value=1.8e-11)
          Length = 1491

 Score = 27.9 bits (59), Expect = 3.8
 Identities = 14/36 (38%), Positives = 22/36 (61%)
 Frame = -2

Query: 152 EQTLRQRHTELGEKCSDLQREIRYLKALMRDLFKAK 45
           +Q+L +  +  G K  DL+ E+RYLK  + D+ K K
Sbjct: 533 KQSLYESESMKG-KIKDLEDEVRYLKERLEDMAKEK 567


>SB_51944| Best HMM Match : LRR_1 (HMM E-Value=7.7e-34)
          Length = 409

 Score = 27.9 bits (59), Expect = 3.8
 Identities = 12/32 (37%), Positives = 23/32 (71%)
 Frame = -2

Query: 155 EEQTLRQRHTELGEKCSDLQREIRYLKALMRD 60
           ++Q  RQ+ TEL +K S+L+++I+  +  MR+
Sbjct: 27  QQQLQRQKQTELEDKQSELEKKIKSQENEMRE 58


>SB_24046| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2848

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 17/71 (23%), Positives = 35/71 (49%)
 Frame = -2

Query: 299  STDEDWSAPSRLKTRLVDDRRSRXKEQNXNXATRYRQXKKX*VXVLLKEEQTLRQRHTEL 120
            S  E++    +L+ +   +RR++ +E N   A R +Q +      + +EE   R+R  E 
Sbjct: 1631 SRSEEYERQRQLELQ-EKERRNKEEEDNLLDAYRRKQEQLLEKERIFEEEMARRERELEE 1689

Query: 119  GEKCSDLQREI 87
             +K  + +R +
Sbjct: 1690 RQKREEEERRV 1700


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,854,776
Number of Sequences: 59808
Number of extensions: 105717
Number of successful extensions: 237
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 232
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 237
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 826502419
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)