Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0285.Seq
         (429 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g31370.2 68415.m03834 bZIP transcription factor (POSF21) iden...    30   0.77 
At2g31370.1 68415.m03833 bZIP transcription factor (POSF21) iden...    30   0.77 
At1g06070.1 68414.m00636 bZIP transcription factor, putative (bZ...    30   0.77 
At2g40620.1 68415.m05010 bZIP transcription factor family protei...    29   1.8  
At4g09400.1 68417.m01549 hypothetical protein similar to At3g453...    27   4.1  
At3g33230.1 68416.m04296 hypothetical protein                          27   4.1  
At2g31370.3 68415.m03832 bZIP transcription factor (POSF21) iden...    27   5.4  
At5g48290.1 68418.m05964 heavy-metal-associated domain-containin...    27   7.1  
At1g53110.1 68414.m06014 expressed protein                             27   7.1  
At5g59380.1 68418.m07441 methyl-CpG-binding domain-containing pr...    26   9.4  
At4g02710.1 68417.m00366 kinase interacting family protein simil...    26   9.4  

>At2g31370.2 68415.m03834 bZIP transcription factor (POSF21)
           identical to GB:Q04088
          Length = 398

 Score = 29.9 bits (64), Expect = 0.77
 Identities = 18/64 (28%), Positives = 32/64 (50%)
 Frame = -2

Query: 281 SAPSRLKTRLVDDRRSRXKEQNXNXATRYRQXKKX*VXVLLKEEQTLRQRHTELGEKCSD 102
           SA    +  L+D +R++    N   A R ++ K   +  L ++ QTL+   T L  + + 
Sbjct: 190 SATKLAELALIDPKRAKRIWANRQSAARSKERKTRYIFELERKVQTLQTEATTLSAQLTL 249

Query: 101 LQRE 90
           LQR+
Sbjct: 250 LQRD 253


>At2g31370.1 68415.m03833 bZIP transcription factor (POSF21)
           identical to GB:Q04088
          Length = 398

 Score = 29.9 bits (64), Expect = 0.77
 Identities = 18/64 (28%), Positives = 32/64 (50%)
 Frame = -2

Query: 281 SAPSRLKTRLVDDRRSRXKEQNXNXATRYRQXKKX*VXVLLKEEQTLRQRHTELGEKCSD 102
           SA    +  L+D +R++    N   A R ++ K   +  L ++ QTL+   T L  + + 
Sbjct: 190 SATKLAELALIDPKRAKRIWANRQSAARSKERKTRYIFELERKVQTLQTEATTLSAQLTL 249

Query: 101 LQRE 90
           LQR+
Sbjct: 250 LQRD 253


>At1g06070.1 68414.m00636 bZIP transcription factor, putative
           (bZIP69) similar to transcriptional activator RF2a
           GB:AF005492 GI:2253277 from [Oryza sativa]; contains
           Pfam profile PF00170: bZIP transcription factor
          Length = 423

 Score = 29.9 bits (64), Expect = 0.77
 Identities = 18/64 (28%), Positives = 32/64 (50%)
 Frame = -2

Query: 281 SAPSRLKTRLVDDRRSRXKEQNXNXATRYRQXKKX*VXVLLKEEQTLRQRHTELGEKCSD 102
           SA    +  L+D +R++    N   A R ++ K   +  L ++ QTL+   T L  + + 
Sbjct: 199 SAAKLSELALIDPKRAKRIWANRQSAARSKERKMRYIAELERKVQTLQTEATSLSAQLTL 258

Query: 101 LQRE 90
           LQR+
Sbjct: 259 LQRD 262


>At2g40620.1 68415.m05010 bZIP transcription factor family protein
           identical to b-Zip DNA binding protein GI:2246376 from
           [Arabidopsis thaliana]; contains a bZIP transcription
           factor basic domain signature (PDOC00036)
          Length = 367

 Score = 28.7 bits (61), Expect = 1.8
 Identities = 19/64 (29%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
 Frame = -2

Query: 278 APSRL-KTRLVDDRRSRXKEQNXNXATRYRQXKKX*VXVLLKEEQTLRQRHTELGEKCSD 102
           AP +L +  +VD +R++    N   A R ++ K   +  L ++ QTL+   T L  + S 
Sbjct: 137 APDKLAELWVVDPKRAKRIIANRQSAARSKERKARYILELERKVQTLQTEATTLSAQLSL 196

Query: 101 LQRE 90
            QR+
Sbjct: 197 FQRD 200


>At4g09400.1 68417.m01549 hypothetical protein similar to At3g45350,
           At2g14330
          Length = 513

 Score = 27.5 bits (58), Expect = 4.1
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = -2

Query: 155 EEQTLRQRHTELGEKCSDLQREIRYLKALMRD 60
           + Q  R+RH +L  K  DL+R +R L+A  +D
Sbjct: 414 QHQAYRRRHRQLLIKLQDLERGMRRLEAHPKD 445


>At3g33230.1 68416.m04296 hypothetical protein
          Length = 154

 Score = 27.5 bits (58), Expect = 4.1
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = -2

Query: 155 EEQTLRQRHTELGEKCSDLQREIRYLKALMRD 60
           + Q  R+RH +L  K  DL+R +R L+A  +D
Sbjct: 55  QHQAYRRRHRQLLIKLQDLERGMRRLEAHPKD 86


>At2g31370.3 68415.m03832 bZIP transcription factor (POSF21)
           identical to GB:Q04088
          Length = 279

 Score = 27.1 bits (57), Expect = 5.4
 Identities = 17/62 (27%), Positives = 30/62 (48%)
 Frame = -2

Query: 281 SAPSRLKTRLVDDRRSRXKEQNXNXATRYRQXKKX*VXVLLKEEQTLRQRHTELGEKCSD 102
           SA    +  L+D +R++    N   A R ++ K   +  L ++ QTL+   T L  + + 
Sbjct: 190 SATKLAELALIDPKRAKRIWANRQSAARSKERKTRYIFELERKVQTLQTEATTLSAQLTL 249

Query: 101 LQ 96
           LQ
Sbjct: 250 LQ 251


>At5g48290.1 68418.m05964 heavy-metal-associated domain-containing
           protein strong similarity to farnesylated proteins ATFP4
           [GI:4097549] and ATFP5 [GI:4097551]; contains Pfam
           profile PF00403: Heavy-metal-associated domain
          Length = 181

 Score = 26.6 bits (56), Expect = 7.1
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = -1

Query: 102 PPKRDSLPKGSDA*SFQGEGSNQVNQSXTPPPEK 1
           PPK++   KG D    +G+G +Q       P +K
Sbjct: 76  PPKKEDEKKGGDGKGAEGKGGDQKGGDKKGPDDK 109


>At1g53110.1 68414.m06014 expressed protein
          Length = 439

 Score = 26.6 bits (56), Expect = 7.1
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = -2

Query: 158 KEEQTLRQRHTELGEKCSDLQREIRYLKALM 66
           KE++ +R R   LGE+ S+++ EI  L   M
Sbjct: 117 KEQEVVRGRIYRLGERLSEIKMEIELLDVQM 147


>At5g59380.1 68418.m07441 methyl-CpG-binding domain-containing
           protein similar to testis specific methyl-CpG binding
           protein MBD2 [Homo sapiens] GI:3800801; contains Pfam
           profile PF01429: Methyl-CpG binding domain
          Length = 225

 Score = 26.2 bits (55), Expect = 9.4
 Identities = 9/17 (52%), Positives = 14/17 (82%)
 Frame = -1

Query: 57  FQGEGSNQVNQSXTPPP 7
           F+G+GSN+V ++ T PP
Sbjct: 146 FEGQGSNRVTRTATVPP 162


>At4g02710.1 68417.m00366 kinase interacting family protein similar
           to kinase interacting protein 1 (GI:13936326) [Petunia
           integrifolia]
          Length = 1111

 Score = 26.2 bits (55), Expect = 9.4
 Identities = 10/31 (32%), Positives = 22/31 (70%)
 Frame = -2

Query: 149 QTLRQRHTELGEKCSDLQREIRYLKALMRDL 57
           QTL+Q H++  E+ ++L  E++ +  +M+D+
Sbjct: 499 QTLQQLHSQSQEELNNLAVELQTVSQIMKDM 529


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,450,424
Number of Sequences: 28952
Number of extensions: 68523
Number of successful extensions: 170
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 169
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 170
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 675111616
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)