Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0284.Seq
         (547 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A7SGI6 Cluster: Predicted protein; n=4; Nematostella ve...    34   2.5  
UniRef50_Q6MMV3 Cluster: Pseudouridine synthase; n=2; Bdellovibr...    32   7.5  
UniRef50_Q7ZXF1 Cluster: Myotubularin-related protein 4; n=6; Te...    32   7.5  
UniRef50_UPI0000503F65 Cluster: galanin receptor 3; n=1; Rattus ...    32   9.9  
UniRef50_Q8YVB3 Cluster: All2068 protein; n=4; Nostocaceae|Rep: ...    32   9.9  
UniRef50_Q899C1 Cluster: DNA helicase; n=1; Clostridium tetani|R...    32   9.9  

>UniRef50_A7SGI6 Cluster: Predicted protein; n=4; Nematostella
            vectensis|Rep: Predicted protein - Nematostella vectensis
          Length = 4220

 Score = 33.9 bits (74), Expect = 2.5
 Identities = 13/23 (56%), Positives = 15/23 (65%)
 Frame = +3

Query: 357  CNHCPPFGYSCQNCFRV*KSRHH 425
            C  CP F Y C+NCFRV +S  H
Sbjct: 2186 CKTCPDFDY-CENCFRVRRSHRH 2207


>UniRef50_Q6MMV3 Cluster: Pseudouridine synthase; n=2; Bdellovibrio
           bacteriovorus|Rep: Pseudouridine synthase - Bdellovibrio
           bacteriovorus
          Length = 290

 Score = 32.3 bits (70), Expect = 7.5
 Identities = 12/33 (36%), Positives = 23/33 (69%)
 Frame = +1

Query: 301 DSPS*KCQQKSYLIVVKSFVTTAPPLATLAKIA 399
           +S S +C+ KS L  + +F+ T PP+ T++++A
Sbjct: 10  ESRSVQCEVKSALFAMATFILTRPPIITISRVA 42


>UniRef50_Q7ZXF1 Cluster: Myotubularin-related protein 4; n=6;
           Tetrapoda|Rep: Myotubularin-related protein 4 - Xenopus
           laevis (African clawed frog)
          Length = 1078

 Score = 32.3 bits (70), Expect = 7.5
 Identities = 18/35 (51%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
 Frame = +3

Query: 429 VHLRRICS--CSTRRHHHRNGRXSTAVVGNHXISF 527
           V LRR  S  CSTR  H RNGR +  + GN   SF
Sbjct: 818 VGLRRPLSYDCSTRSQHSRNGRHTMKLTGNLPASF 852


>UniRef50_UPI0000503F65 Cluster: galanin receptor 3; n=1; Rattus
           norvegicus|Rep: galanin receptor 3 - Rattus norvegicus
          Length = 364

 Score = 31.9 bits (69), Expect = 9.9
 Identities = 15/44 (34%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
 Frame = +3

Query: 354 VCNHCPPFGYSCQN-CFRV*KSRHHLVHLRRICSCSTRRHHHRN 482
           + +HC  +  SC N       SRH     RR+  C  RRH H +
Sbjct: 268 LASHCLAYANSCLNPLVYSLASRHFRARFRRLWPCGRRRHRHHH 311


>UniRef50_Q8YVB3 Cluster: All2068 protein; n=4; Nostocaceae|Rep:
           All2068 protein - Anabaena sp. (strain PCC 7120)
          Length = 311

 Score = 31.9 bits (69), Expect = 9.9
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = +3

Query: 348 QIVCNHCPPFGYSCQNCFRV*KSRHHLVHLRRICSC 455
           +++C     FG+S + C R  K+ H ++ L RI  C
Sbjct: 64  RVICVDAKGFGFSDKPCLRQEKNGHQVIELERIIQC 99


>UniRef50_Q899C1 Cluster: DNA helicase; n=1; Clostridium tetani|Rep:
           DNA helicase - Clostridium tetani
          Length = 1352

 Score = 31.9 bits (69), Expect = 9.9
 Identities = 21/78 (26%), Positives = 40/78 (51%)
 Frame = +3

Query: 36  DGLTL*ILIKFYMNLTTFILLGKFQSKNALLQILGRITIKKYHSFNII*IVLPIKCLVAS 215
           D + L I+IK Y+   T I+       N  + +   + +K+Y+  NI+ I   +K + A 
Sbjct: 631 DSIELAIIIKLYLEQKT-IVKNMISLWNNTMNMYDELLVKEYNVNNILIIENYMKNIEAI 689

Query: 216 GHYNK*IKLATTVYPNRI 269
            ++N+ +K++ T Y   I
Sbjct: 690 VNWNEKVKMSITKYLGNI 707


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 446,279,723
Number of Sequences: 1657284
Number of extensions: 7629781
Number of successful extensions: 12712
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 12379
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12707
length of database: 575,637,011
effective HSP length: 96
effective length of database: 416,537,747
effective search space used: 35405708495
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)