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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0284.Seq
         (547 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_17592| Best HMM Match : No HMM Matches (HMM E-Value=.)              34   0.087
SB_13369| Best HMM Match : UPF0005 (HMM E-Value=0.3)                   27   7.6  

>SB_17592| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3592

 Score = 33.9 bits (74), Expect = 0.087
 Identities = 13/23 (56%), Positives = 15/23 (65%)
 Frame = +3

Query: 357  CNHCPPFGYSCQNCFRV*KSRHH 425
            C  CP F Y C+NCFRV +S  H
Sbjct: 1199 CKTCPDFDY-CENCFRVRRSHRH 1220


>SB_13369| Best HMM Match : UPF0005 (HMM E-Value=0.3)
          Length = 509

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 17/56 (30%), Positives = 23/56 (41%)
 Frame = +3

Query: 321 PTKILFNSRQIVCNHCPPFGYSCQNCFRV*KSRHHLVHLRRICSCSTRRHHHRNGR 488
           P++ L   R  + NH  P  +   +C R   S HH       C C    +HHR  R
Sbjct: 228 PSRHLHCHRPRLSNHHRPSRH--HHCHRPRLSNHHRPSRHLHCHCPRLSNHHRLSR 281


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,032,293
Number of Sequences: 59808
Number of extensions: 242667
Number of successful extensions: 413
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 358
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 412
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1252112599
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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