BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= msgV0284.Seq (547 letters) Database: nematostella 59,808 sequences; 16,821,457 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SB_17592| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.087 SB_13369| Best HMM Match : UPF0005 (HMM E-Value=0.3) 27 7.6 >SB_17592| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 3592 Score = 33.9 bits (74), Expect = 0.087 Identities = 13/23 (56%), Positives = 15/23 (65%) Frame = +3 Query: 357 CNHCPPFGYSCQNCFRV*KSRHH 425 C CP F Y C+NCFRV +S H Sbjct: 1199 CKTCPDFDY-CENCFRVRRSHRH 1220 >SB_13369| Best HMM Match : UPF0005 (HMM E-Value=0.3) Length = 509 Score = 27.5 bits (58), Expect = 7.6 Identities = 17/56 (30%), Positives = 23/56 (41%) Frame = +3 Query: 321 PTKILFNSRQIVCNHCPPFGYSCQNCFRV*KSRHHLVHLRRICSCSTRRHHHRNGR 488 P++ L R + NH P + +C R S HH C C +HHR R Sbjct: 228 PSRHLHCHRPRLSNHHRPSRH--HHCHRPRLSNHHRPSRHLHCHCPRLSNHHRLSR 281 Database: nematostella Posted date: Oct 22, 2007 1:22 PM Number of letters in database: 16,821,457 Number of sequences in database: 59,808 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 14,032,293 Number of Sequences: 59808 Number of extensions: 242667 Number of successful extensions: 413 Number of sequences better than 10.0: 2 Number of HSP's better than 10.0 without gapping: 358 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 412 length of database: 16,821,457 effective HSP length: 78 effective length of database: 12,156,433 effective search space used: 1252112599 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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