Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0284.Seq
         (547 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g55970.1 68414.m06419 histone acetyltransferase 4 (HAC4) simi...    28   4.7  
At2g13450.1 68415.m01484 hypothetical protein similar to zinc fi...    27   8.2  

>At1g55970.1 68414.m06419 histone acetyltransferase 4 (HAC4) similar
            to CREB-binding protein GB:AAC51770 GI:2443859 from [Homo
            sapiens]; contains Pfam PF02135: TAZ zinc finger profile;
            contains Pfam PF00569: Zinc finger, ZZ type domain;
            identical to histone acetyltransferase HAC4 (GI:14794966)
            {Arabidopsis thaliana}
          Length = 1456

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = +3

Query: 324  TKILFNSRQIVCNHCPPFGYSCQNCFRV*KSR 419
            T ++ +  + VCNHC  F   C  C+ V ++R
Sbjct: 1170 TTLMVSGNRWVCNHCKNF-QICDKCYEVEQNR 1200


>At2g13450.1 68415.m01484 hypothetical protein similar to zinc
           finger protein [Arabidopsis thaliana] GI:976277
          Length = 394

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 12/30 (40%), Positives = 15/30 (50%)
 Frame = +3

Query: 435 LRRICSCSTRRHHHRNGRXSTAVVGNHXIS 524
           LRRICS   R  HHRN      +   H ++
Sbjct: 201 LRRICSSCFRMTHHRNSCLYRQIESLHRVT 230


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,762,814
Number of Sequences: 28952
Number of extensions: 170132
Number of successful extensions: 277
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 276
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 277
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1023490624
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)