Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0272.Seq
         (499 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|ch...    25   4.8  
SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual    25   8.4  
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo...    25   8.4  

>SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 219

 Score = 25.4 bits (53), Expect = 4.8
 Identities = 12/39 (30%), Positives = 18/39 (46%)
 Frame = +2

Query: 359 W*TPHFRLNIPNLGNFLGRHIYRYXLSDIPLYTRXRLCR 475
           W   HFRL + NLGN +         S+ P   + ++ R
Sbjct: 25  WDPNHFRLFVGNLGNDVNDESLYQAFSEYPSLVKTKVVR 63


>SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1828

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 17/41 (41%), Positives = 22/41 (53%)
 Frame = +1

Query: 220 LNTGRIVVEFQVSGLQAHPSSQGLGLLQSIRATSELQVRGG 342
           LN G IVV FQ++ L+    SQ  GL  S+   + LQ   G
Sbjct: 207 LNIGTIVVTFQLNVLRCLSLSQINGL--SLNTINNLQSEDG 245


>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1224

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 13/43 (30%), Positives = 19/43 (44%)
 Frame = -3

Query: 353  TNPXPPRTCNSLVARIDCSKPKPCEEGCACKPDT*NSTTIRPV 225
            T P PP T +   +    + P P + G    P T + T + PV
Sbjct: 906  TLPPPPPTASMTASAPAIASPPPPKVGETYHPPTASGTRVPPV 948


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,941,895
Number of Sequences: 5004
Number of extensions: 36961
Number of successful extensions: 73
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 73
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 73
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 196153982
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)