Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0272.Seq
         (499 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0804 - 19844059-19844777,19844914-19844995,19846580-19846585     36   0.024
04_04_1553 - 34363848-34366058,34369087-34370451                       28   4.8  
02_02_0604 - 12064451-12065683,12065729-12065827,12065858-120659...    27   6.3  
02_03_0171 + 15945591-15945681,15947068-15947138,15947715-159478...    27   8.4  

>04_03_0804 - 19844059-19844777,19844914-19844995,19846580-19846585
          Length = 268

 Score = 35.5 bits (78), Expect = 0.024
 Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
 Frame = -3

Query: 398 PN*ECSGENEEFTNCTNPXP-PRTCNSLVAR-IDCSKPKPCEEGCACKPD 255
           P  +C  +     +C  P P P+ C+    +   C KPKPCE+   CKP+
Sbjct: 97  PPEDCKPKPCHCCSCEKPKPKPKPCHCEKPKPCHCEKPKPCEKPPPCKPE 146


>04_04_1553 - 34363848-34366058,34369087-34370451
          Length = 1191

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 16/41 (39%), Positives = 21/41 (51%)
 Frame = -1

Query: 373 MRSLPTARTHXRRXLAIHSSLVLIVVNPNPAKRDALANQTL 251
           +RS    R   RR  A+H+ LV+     +PA    LANQ L
Sbjct: 21  LRSCSPRRAVLRRARAVHALLVVSSTPSSPALTTFLANQLL 61


>02_02_0604 -
           12064451-12065683,12065729-12065827,12065858-12065955,
           12066782-12066924,12067233-12067729
          Length = 689

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = -2

Query: 231 ACVKICECPQMASSPDCATL 172
           A + I +CP++AS PDC+ L
Sbjct: 414 ATLCISDCPKLASVPDCSVL 433


>02_03_0171 +
           15945591-15945681,15947068-15947138,15947715-15947817,
           15948189-15948328,15948535-15948693,15948775-15948878,
           15950373-15950548,15952643-15952832,15953704-15953803,
           15954171-15954339,15954908-15954990,15955073-15955149,
           15955386-15955557
          Length = 544

 Score = 27.1 bits (57), Expect = 8.4
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = +1

Query: 280 SQGLGLLQSIRATSELQVRGGHGFVQLVNSSFSPEH 387
           S+GL    +++ TS L+    HGF   VNS+ S  H
Sbjct: 467 SKGLRYGDAVKLTSMLE-EASHGFANAVNSTISSLH 501


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,140,625
Number of Sequences: 37544
Number of extensions: 233679
Number of successful extensions: 538
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 531
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 536
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1047416480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)