Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0272.Seq
(499 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_25361| Best HMM Match : Cadherin (HMM E-Value=0) 32 0.23
SB_32754| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 0.92
SB_52147| Best HMM Match : EGF (HMM E-Value=0) 30 1.2
SB_10656| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.6
SB_52861| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.8
SB_28495| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.8
SB_44878| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.8
SB_59202| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.7
SB_17530| Best HMM Match : EGF_CA (HMM E-Value=0) 28 3.7
SB_18560| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.9
SB_25762| Best HMM Match : VWD (HMM E-Value=2.2e-16) 28 4.9
SB_2045| Best HMM Match : EGF (HMM E-Value=0) 27 6.5
SB_47942| Best HMM Match : TSP_1 (HMM E-Value=0) 27 8.6
SB_14044| Best HMM Match : EGF_CA (HMM E-Value=4.1e-13) 27 8.6
SB_32722| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.6
>SB_25361| Best HMM Match : Cadherin (HMM E-Value=0)
Length = 4833
Score = 32.3 bits (70), Expect = 0.23
Identities = 18/54 (33%), Positives = 24/54 (44%)
Frame = -3
Query: 419 CVARENCPN*ECSGENEEFTNCTNPXPPRTCNSLVARIDCSKPKPCEEGCACKP 258
CV C + C+ N+E T C TC V+ C +P PC+ CKP
Sbjct: 4254 CVTSGQCQSSPCAN-NKEKTACYEDWDSYTC---VSAAPC-QPDPCKNNATCKP 4302
>SB_32754| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 5659
Score = 30.3 bits (65), Expect = 0.92
Identities = 22/69 (31%), Positives = 28/69 (40%), Gaps = 2/69 (2%)
Frame = -3
Query: 461 CVCKEGYLKDXXGKCVARENCPN*ECSGENEEFTN--CTNPXPPRTCNSLVARIDCSKPK 288
C C EGY +D GKC C +G+++ N CTN C L I K
Sbjct: 484 CQCAEGYERDSQGKCADVNECK----TGKHDCSVNALCTNTDGTFICRCLRGYI--GDGK 537
Query: 287 PCEEGCACK 261
C + CK
Sbjct: 538 TCIDFDECK 546
>SB_52147| Best HMM Match : EGF (HMM E-Value=0)
Length = 364
Score = 29.9 bits (64), Expect = 1.2
Identities = 20/68 (29%), Positives = 26/68 (38%), Gaps = 5/68 (7%)
Frame = -3
Query: 461 CVCKEGYLKD----XXGKCVARENCPN*ECSGENEEF-TNCTNPXPPRTCNSLVARIDCS 297
CVC EGY D C++ C N C + +C N C +L ID
Sbjct: 82 CVCSEGYTGDRCETVVDMCISAP-CHNGTCINYGSSYICDCFNSYTGHLCETL---IDAC 137
Query: 296 KPKPCEEG 273
PC +G
Sbjct: 138 HSNPCNDG 145
>SB_10656| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1931
Score = 29.5 bits (63), Expect = 1.6
Identities = 20/72 (27%), Positives = 28/72 (38%), Gaps = 1/72 (1%)
Frame = -3
Query: 497 CPXVDQKSCKAXCV-CKEGYLKDXXGKCVARENCPN*ECSGENEEFTNCTNPXPPRTCNS 321
C K+ C C++GY G V +NC ECS + C + C +
Sbjct: 1196 CNRCTNKAAGDRCERCRDGYY----GDAVVAKNCAKCECSACGAVTSVCNHTNGACQCKA 1251
Query: 320 LVARIDCSKPKP 285
V +CS KP
Sbjct: 1252 NVIGPNCSTCKP 1263
>SB_52861| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1487
Score = 28.7 bits (61), Expect = 2.8
Identities = 12/29 (41%), Positives = 17/29 (58%), Gaps = 2/29 (6%)
Frame = -3
Query: 461 CVCKEGYLKDXXGKC--VARENCPN*ECS 381
CVCK GY + G+C V + C N +C+
Sbjct: 218 CVCKPGYEQALSGQCVPVCTQGCVNGKCT 246
>SB_28495| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 6753
Score = 28.7 bits (61), Expect = 2.8
Identities = 16/51 (31%), Positives = 23/51 (45%), Gaps = 2/51 (3%)
Frame = -3
Query: 386 CSGENEEFT-NCTNPXPPRTCNSLVARIDCSKPKPCEEGCAC-KPDT*NST 240
C+ + +T NCT+ C +ID P PC+ G C P + N T
Sbjct: 3853 CTNSGQSYTCNCTSDYIGEHCEE---KIDPCNPTPCQNGGTCASPSSSNYT 3900
>SB_44878| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1338
Score = 28.7 bits (61), Expect = 2.8
Identities = 14/44 (31%), Positives = 20/44 (45%)
Frame = -3
Query: 485 DQKSCKAXCVCKEGYLKDXXGKCVARENCPN*ECSGENEEFTNC 354
+++ CK CK GY+KD G C +C G +F C
Sbjct: 994 EKEKCKPM-QCKSGYVKDVCGCCDVCAKTVTQKCGGYWGQFGTC 1036
>SB_59202| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1530
Score = 28.3 bits (60), Expect = 3.7
Identities = 14/35 (40%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
Frame = -3
Query: 497 CPXVDQKSCKAXCVC-KEGYLKDXXGKCVARENCP 396
CP + C C C KEG L + KCV + CP
Sbjct: 1151 CP---SRRCVEGCYCEKEGELMNNEHKCVDKTQCP 1182
Score = 27.1 bits (57), Expect = 8.6
Identities = 10/28 (35%), Positives = 14/28 (50%)
Frame = -3
Query: 338 PRTCNSLVARIDCSKPKPCEEGCACKPD 255
P TC+ L D + C EGC C+ +
Sbjct: 1138 PSTCDDLANVTDTCPSRRCVEGCYCEKE 1165
>SB_17530| Best HMM Match : EGF_CA (HMM E-Value=0)
Length = 165
Score = 28.3 bits (60), Expect = 3.7
Identities = 21/69 (30%), Positives = 28/69 (40%), Gaps = 2/69 (2%)
Frame = -3
Query: 461 CVCKEGYLKDXXGKCVARENCPN*ECSGENEEFTN--CTNPXPPRTCNSLVARIDCSKPK 288
C C EGY ++ GKC C +G+++ N CTN C L I K
Sbjct: 27 CQCAEGYERNSQGKCADVNECK----TGKHDCSVNALCTNTDGTFICRCLRGYI--GDGK 80
Query: 287 PCEEGCACK 261
C + CK
Sbjct: 81 TCIDFDECK 89
>SB_18560| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1937
Score = 27.9 bits (59), Expect = 4.9
Identities = 16/45 (35%), Positives = 19/45 (42%)
Frame = -3
Query: 461 CVCKEGYLKDXXGKCVARENCPN*ECSGENEEFTNCTNPXPPRTC 327
CVC GYL D KC A C +C N + + RTC
Sbjct: 1224 CVCNPGYLGDGR-KCTADGTCEGVKCD-PNAKCIAASPSGENRTC 1266
>SB_25762| Best HMM Match : VWD (HMM E-Value=2.2e-16)
Length = 705
Score = 27.9 bits (59), Expect = 4.9
Identities = 15/41 (36%), Positives = 19/41 (46%)
Frame = -3
Query: 377 ENEEFTNCTNPXPPRTCNSLVARIDCSKPKPCEEGCACKPD 255
EN F CT+ P TC+ R + C EGC CK +
Sbjct: 182 ENAVFKYCTSACP-ETCHDPPGRNKTCSMR-CVEGCECKEE 220
>SB_2045| Best HMM Match : EGF (HMM E-Value=0)
Length = 1101
Score = 27.5 bits (58), Expect = 6.5
Identities = 17/72 (23%), Positives = 28/72 (38%), Gaps = 5/72 (6%)
Frame = -3
Query: 461 CVCKEGYL----KDXXGKCVARENCPN*ECSGENEEFT-NCTNPXPPRTCNSLVARIDCS 297
C+C +G+ + +C+ C E F +C +TC + D
Sbjct: 537 CLCLQGFTGQRCETDIDECLTTPCLNGGTCHDEINNFRCDCPTGYYGKTCTTTTDECD-- 594
Query: 296 KPKPCEEGCACK 261
P PC+ G +CK
Sbjct: 595 -PNPCKNGASCK 605
>SB_47942| Best HMM Match : TSP_1 (HMM E-Value=0)
Length = 2195
Score = 27.1 bits (57), Expect = 8.6
Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 3/37 (8%)
Frame = -3
Query: 383 SGENEEFTNCTNPXPP---RTCNSLVARIDCSKPKPC 282
+G NCTNP P RTC+ L RI+ +PC
Sbjct: 401 NGTRTRIRNCTNPPPKHNGRTCDVLGPRIE---TQPC 434
>SB_14044| Best HMM Match : EGF_CA (HMM E-Value=4.1e-13)
Length = 184
Score = 27.1 bits (57), Expect = 8.6
Identities = 15/39 (38%), Positives = 18/39 (46%)
Frame = +2
Query: 239 SSSFKCLVCKRIPLRRVWVYYNQYERRVNCKXAAXMGSC 355
S S +C L + Y NQ R VN K A +GSC
Sbjct: 38 SQSRRCKTTASAKLACLQCYLNQACRAVNYKKRANLGSC 76
>SB_32722| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 603
Score = 27.1 bits (57), Expect = 8.6
Identities = 24/73 (32%), Positives = 29/73 (39%), Gaps = 5/73 (6%)
Frame = -3
Query: 461 CVCKEGYLKD--XXGKCVAREN-CPN-*ECSGENEEF-TNCTNPXPPRTCNSLVARIDCS 297
CVCK+GY D K V N C N C + F +C C + R C
Sbjct: 262 CVCKDGYHGDGKTCNKNVCHPNPCHNGATCVATDSSFDCDCVAGWTGPLCQT---RQYCI 318
Query: 296 KPKPCEEGCACKP 258
P PC+ G C P
Sbjct: 319 -PNPCQNGGTCVP 330
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,508,523
Number of Sequences: 59808
Number of extensions: 286068
Number of successful extensions: 791
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 674
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 790
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1075029208
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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