Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0272.Seq
         (499 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ384991-1|ABD51779.1|   94|Apis mellifera allergen Api m 6 vari...    32   0.003
DQ384990-1|ABD51778.1|   92|Apis mellifera allergen Api m 6 vari...    32   0.003
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    22   4.1  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    22   4.1  
AB208107-1|BAE72139.1|   71|Apis mellifera Broad complex zinc fi...    21   5.4  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   9.4  

>DQ384991-1|ABD51779.1|   94|Apis mellifera allergen Api m 6 variant
           2 precursor protein.
          Length = 94

 Score = 32.3 bits (70), Expect = 0.003
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = -3

Query: 479 KSCKAXCVCKEGYLKDXXGKCVARENC 399
           K C   CVC+ GYL++    CV R  C
Sbjct: 65  KICAPGCVCRLGYLRNKKKVCVPRSKC 91


>DQ384990-1|ABD51778.1|   92|Apis mellifera allergen Api m 6 variant
           1 precursor protein.
          Length = 92

 Score = 32.3 bits (70), Expect = 0.003
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = -3

Query: 479 KSCKAXCVCKEGYLKDXXGKCVARENC 399
           K C   CVC+ GYL++    CV R  C
Sbjct: 65  KICAPGCVCRLGYLRNKKKVCVPRSKC 91


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.8 bits (44), Expect = 4.1
 Identities = 6/15 (40%), Positives = 11/15 (73%)
 Frame = -2

Query: 153 MIIWISKTLFYIFPS 109
           ++ W+ +  FYI+PS
Sbjct: 164 VVSWLQEPSFYIYPS 178


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.8 bits (44), Expect = 4.1
 Identities = 6/15 (40%), Positives = 11/15 (73%)
 Frame = -2

Query: 153 MIIWISKTLFYIFPS 109
           ++ W+ +  FYI+PS
Sbjct: 164 VVSWLQEPSFYIYPS 178


>AB208107-1|BAE72139.1|   71|Apis mellifera Broad complex zinc
           finger domain-Z2 isoform protein.
          Length = 71

 Score = 21.4 bits (43), Expect = 5.4
 Identities = 5/15 (33%), Positives = 11/15 (73%)
 Frame = +2

Query: 230 AELSSSFKCLVCKRI 274
           AE    ++C++C+R+
Sbjct: 30  AERQEEYRCVICERV 44


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 20.6 bits (41), Expect = 9.4
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = +1

Query: 199  HLRTFANLNTGRIVVEFQVSGL 264
            HLR  A+ N G  V E++ + L
Sbjct: 1531 HLRVTAHNNAGFAVAEYEFATL 1552


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 135,255
Number of Sequences: 438
Number of extensions: 2798
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 13618701
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)