Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0272.Seq
         (499 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g30860.1 68417.m04381 SET domain-containing protein low simil...    30   1.00 
At5g08770.1 68418.m01040 expressed protein                             29   1.3  
At3g46290.1 68416.m05010 protein kinase, putative similar to rec...    28   3.0  
At4g15260.1 68417.m02338 UDP-glucoronosyl/UDP-glucosyl transfera...    27   5.3  
At2g43255.1 68415.m05376 expressed protein                             27   9.3  
At2g25660.1 68415.m03075 expressed protein                             27   9.3  
At1g21240.1 68414.m02654 wall-associated kinase, putative simila...    27   9.3  
At1g01650.1 68414.m00083 protease-associated (PA) domain-contain...    27   9.3  

>At4g30860.1 68417.m04381 SET domain-containing protein low
           similarity to IL-5 promoter REII-region-binding protein
           [Homo sapiens] GI:12642795; contains Pfam profile
           PF00856: SET domain
          Length = 497

 Score = 29.9 bits (64), Expect = 1.00
 Identities = 15/35 (42%), Positives = 17/35 (48%)
 Frame = -3

Query: 362 TNCTNPXPPRTCNSLVARIDCSKPKPCEEGCACKP 258
           TNC  P   R+C   V  I CSK   C E C  +P
Sbjct: 288 TNC-GPNCDRSCVCRVQCISCSKGCSCPESCGNRP 321


>At5g08770.1 68418.m01040 expressed protein
          Length = 297

 Score = 29.5 bits (63), Expect = 1.3
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = +1

Query: 196 SHLRTFANLNTGRIVVEFQVSGLQAHPSSQG 288
           SHLR+F +L+ G   + F  + ++  PSS G
Sbjct: 156 SHLRSFVSLSNGLFKLVFSATTVETSPSSSG 186


>At3g46290.1 68416.m05010 protein kinase, putative similar to
           receptor-like protein kinase [Catharanthus roseus]
           gi|1644291|emb|CAA97692
          Length = 830

 Score = 28.3 bits (60), Expect = 3.0
 Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
 Frame = +1

Query: 4   LIIICQFNNK*IFLFTYDEFYNILEHFYMRIIS*LTWK-NIE*C 132
           LI  C  NN+ I ++ Y E   +  H Y   +  LTWK  +E C
Sbjct: 544 LIGYCDENNEMILIYEYMENGTVKSHLYGSGLPSLTWKQRLEIC 587


>At4g15260.1 68417.m02338 UDP-glucoronosyl/UDP-glucosyl transferase
           family protein contains Pfam profile: PF00201
           UDP-glucoronosyl and UDP-glucosyl transferase
          Length = 359

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 11/45 (24%), Positives = 24/45 (53%)
 Frame = +2

Query: 128 NVFEIHIIINLTLHYNVAQSGELAICGHSQILTQAELSSSFKCLV 262
           N FE+   + L +      SG+L + G  +I+T  ++  + +C++
Sbjct: 272 NAFEMVEELGLAVEIRKCISGDLLLIGEMEIVTAEDIERAIRCVM 316


>At2g43255.1 68415.m05376 expressed protein
          Length = 214

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = -3

Query: 350 NPXPPRTCNSLVARIDCSKPKPCEEGC 270
           NP P R C+ +V  ++  K    E GC
Sbjct: 186 NPDPHRLCDDMVESLNIIKSAALERGC 212


>At2g25660.1 68415.m03075 expressed protein 
          Length = 2146

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = +1

Query: 292  GLLQSIRATSELQVRGGHGFVQLVNSSFS 378
            GL+Q       LQ R GHG + ++   FS
Sbjct: 1201 GLIQKAEIQLNLQKRRGHGLLSVIRPKFS 1229


>At1g21240.1 68414.m02654 wall-associated kinase, putative similar
           to wall-associated kinase 1 [Arabidopsis thaliana]
           GI:3549626; expressed in leaves and stems & induced by
           salicylic acid or INA (PMID:10380805)
          Length = 741

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 26/99 (26%), Positives = 37/99 (37%), Gaps = 3/99 (3%)
 Frame = -3

Query: 461 CVCKEGYLKDXXGKCVARENCPN*-ECSGENEEFTNCTNPXPPRTCNSLVARIDCSKPK- 288
           C C EGY     G     E C +  EC  +     NC++P   +TC +     DC  P  
Sbjct: 275 CKCNEGY----DGNPYRSEGCKDIDECISDTH---NCSDP---KTCRNRDGGFDCKCPSG 324

Query: 287 -PCEEGCACKPDT*NSTTIRPVLRFANVRKWLALLTVQH 174
                  +C       T I  V+    +   LA + +QH
Sbjct: 325 YDLNSSMSCTRPEYKRTRIFLVIIIGVLVLLLAAICIQH 363


>At1g01650.1 68414.m00083 protease-associated (PA) domain-containing
           protein contains protease associated (PA) domain,
           Pfam:PF02225
          Length = 491

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 13/35 (37%), Positives = 16/35 (45%)
 Frame = +3

Query: 390 LIWAIFSGDTFTXXVFQISLFTHAXGFAGLLVHRW 494
           +I AIF G  F     Q  +     G  G L+HRW
Sbjct: 259 VISAIFGGFLFPDHALQAYVILVYRGVGGTLLHRW 293


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,025,459
Number of Sequences: 28952
Number of extensions: 196251
Number of successful extensions: 410
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 406
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 410
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 878448512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)