Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0271.Seq
         (499 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone recepto...    27   0.094
EF468474-1|ABR25244.1|  516|Tribolium castaneum methoprene-toler...    23   1.5  
DQ855488-1|ABH88175.1|  112|Tribolium castaneum chemosensory pro...    22   3.5  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    22   3.5  
EF125544-1|ABL73928.1|  279|Tribolium castaneum obstractor B pro...    21   4.7  
AY584475-1|AAS93634.1|  209|Tribolium castaneum homothorax protein.    21   6.2  
AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.    21   6.2  
AJ457831-1|CAD29886.1|  249|Tribolium castaneum helix-loop-helix...    21   6.2  

>AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone receptor
           (isoform A) protein.
          Length = 549

 Score = 27.1 bits (57), Expect = 0.094
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +2

Query: 38  KTQQWVTSKTHTSRPETPGPQPPS 109
           +T  W++S +    P TP P PPS
Sbjct: 102 RTDDWLSSPSGNVPPLTPSPGPPS 125


>EF468474-1|ABR25244.1|  516|Tribolium castaneum methoprene-tolerant
           protein.
          Length = 516

 Score = 23.0 bits (47), Expect = 1.5
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = +1

Query: 139 GFVMLKGRPCKIVEMSTSKTGKHGHAKVHLVGIDIFN 249
           GF+++     KIV +S +     GH +  L+G  IFN
Sbjct: 114 GFLLILTPNGKIVFVSHTVEHLLGHLQTDLMGQSIFN 150


>DQ855488-1|ABH88175.1|  112|Tribolium castaneum chemosensory
           protein 1 protein.
          Length = 112

 Score = 21.8 bits (44), Expect = 3.5
 Identities = 8/19 (42%), Positives = 14/19 (73%)
 Frame = -3

Query: 98  EAPESPVSKCVSSMSPIVV 42
           EAP  PV + + S++P+V+
Sbjct: 55  EAPCDPVGRRLKSLAPLVL 73



 Score = 20.6 bits (41), Expect = 8.1
 Identities = 11/30 (36%), Positives = 15/30 (50%)
 Frame = +3

Query: 321 QLTDISDDGYLTLMADNGDLREDLKIPDGD 410
           QLT ISD+   + + D   L   LK   G+
Sbjct: 26  QLTRISDEAIESTLNDRRYLLRQLKCATGE 55


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 21.8 bits (44), Expect = 3.5
 Identities = 10/29 (34%), Positives = 13/29 (44%)
 Frame = +2

Query: 80   PETPGPQPPSPCNVRPCVKTVSLC*RVVH 166
            P+  GPQP S C+          C R +H
Sbjct: 1268 PKMGGPQPYSACSENAFAAYPGDCTRYLH 1296


>EF125544-1|ABL73928.1|  279|Tribolium castaneum obstractor B
           protein.
          Length = 279

 Score = 21.4 bits (43), Expect = 4.7
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = +2

Query: 71  TSRPETPGPQPPSPC 115
           TSRP+   PQP   C
Sbjct: 93  TSRPKLQEPQPSQHC 107


>AY584475-1|AAS93634.1|  209|Tribolium castaneum homothorax protein.
          Length = 209

 Score = 21.0 bits (42), Expect = 6.2
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = +2

Query: 59  SKTHTSRPETPGPQPPS 109
           S +HT    TP  +PPS
Sbjct: 60  STSHTDGASTPDVRPPS 76


>AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.
          Length = 456

 Score = 21.0 bits (42), Expect = 6.2
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = +2

Query: 59  SKTHTSRPETPGPQPPS 109
           S +HT    TP  +PPS
Sbjct: 216 STSHTDGASTPDVRPPS 232


>AJ457831-1|CAD29886.1|  249|Tribolium castaneum helix-loop-helix
           transcription factor protein.
          Length = 249

 Score = 21.0 bits (42), Expect = 6.2
 Identities = 11/32 (34%), Positives = 14/32 (43%)
 Frame = +2

Query: 56  TSKTHTSRPETPGPQPPSPCNVRPCVKTVSLC 151
           T+ T +S       Q P P +VRP    V  C
Sbjct: 206 TASTASSASNYSPSQSPEPESVRPLSLVVRRC 237


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 122,881
Number of Sequences: 336
Number of extensions: 2745
Number of successful extensions: 10
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 11735024
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)