Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0271.Seq
(499 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC336.10c |tif512||translation initiation factor|Schizosacchar... 118 6e-28
SPAC26H5.10c |tif51||translation initiation factor eIF5A|Schizos... 118 6e-28
SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic... 27 2.1
SPCC825.04c |||N-acetyltransferase |Schizosaccharomyces pombe|ch... 27 2.1
SPAC23G3.08c |ubp7||ubiquitin C-terminal hydrolase Ubp7|Schizosa... 25 4.8
SPBC15C4.02 |||ABC1 kinase family protein|Schizosaccharomyces po... 25 6.3
SPAC13A11.04c |ubp8||ubiquitin C-terminal hydrolase Ubp8|Schizos... 25 8.4
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar... 25 8.4
>SPBC336.10c |tif512||translation initiation
factor|Schizosaccharomyces pombe|chr 2|||Manual
Length = 157
Score = 118 bits (283), Expect = 6e-28
Identities = 52/76 (68%), Positives = 62/76 (81%)
Frame = +1
Query: 49 MGDIEDTHFETGDSGASATFPMQCSALRKNGFVMLKGRPCKIVEMSTSKTGKHGHAKVHL 228
M + E FE G++GAS TFPMQCSALRKNG V++KGRPCKIV+MSTSKTGKHGHAKVH+
Sbjct: 1 MAEEEHVDFEGGEAGASLTFPMQCSALRKNGHVVIKGRPCKIVDMSTSKTGKHGHAKVHI 60
Query: 229 VGIDIFNGKSMKISVP 276
V +DIFNG+ + P
Sbjct: 61 VALDIFNGRKYEDMSP 76
Score = 99 bits (238), Expect = 2e-22
Identities = 42/81 (51%), Positives = 62/81 (76%)
Frame = +3
Query: 255 KYEDICPSTHNMDVPHVKREDYQLTDISDDGYLTLMADNGDLREDLKIPDGDLGXQLRXD 434
KYED+ PSTHNMDVP VKR++YQL +I DDGYL LM +G ++D+++P+G+LG ++
Sbjct: 70 KYEDMSPSTHNMDVPVVKRDEYQLVNI-DDGYLNLMTTDGTTKDDVRLPEGELGNEIEEG 128
Query: 435 FDSGKELLCTVLKSCGEECVI 497
F+ GK+L+ TV+ + GEE +
Sbjct: 129 FEEGKDLIITVVSAMGEEIAL 149
>SPAC26H5.10c |tif51||translation initiation factor
eIF5A|Schizosaccharomyces pombe|chr 1|||Manual
Length = 157
Score = 118 bits (283), Expect = 6e-28
Identities = 52/76 (68%), Positives = 62/76 (81%)
Frame = +1
Query: 49 MGDIEDTHFETGDSGASATFPMQCSALRKNGFVMLKGRPCKIVEMSTSKTGKHGHAKVHL 228
M + E FE G++GAS TFPMQCSALRKNG V++KGRPCKIV+MSTSKTGKHGHAKVH+
Sbjct: 1 MAEEEHVDFEGGEAGASLTFPMQCSALRKNGHVVIKGRPCKIVDMSTSKTGKHGHAKVHI 60
Query: 229 VGIDIFNGKSMKISVP 276
V +DIFNG+ + P
Sbjct: 61 VALDIFNGRKYEDMSP 76
Score = 100 bits (239), Expect = 1e-22
Identities = 42/81 (51%), Positives = 62/81 (76%)
Frame = +3
Query: 255 KYEDICPSTHNMDVPHVKREDYQLTDISDDGYLTLMADNGDLREDLKIPDGDLGXQLRXD 434
KYED+ PSTHNMDVP VKR++YQL +I DDGYL LM +G ++D+++P+G+LG ++
Sbjct: 70 KYEDMSPSTHNMDVPVVKRDEYQLVNI-DDGYLNLMTTDGTTKDDVRLPEGELGNEIEEG 128
Query: 435 FDSGKELLCTVLKSCGEECVI 497
FD G++L+ TV+ + GEE +
Sbjct: 129 FDEGRDLIITVVSAMGEETAL 149
>SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic
subunit Bgs1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1729
Score = 26.6 bits (56), Expect = 2.1
Identities = 9/23 (39%), Positives = 15/23 (65%)
Frame = +3
Query: 285 NMDVPHVKREDYQLTDISDDGYL 353
NM +P+++ E Q+ D + D YL
Sbjct: 968 NMSIPYIRGEYVQMIDANQDNYL 990
>SPCC825.04c |||N-acetyltransferase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 204
Score = 26.6 bits (56), Expect = 2.1
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = +3
Query: 141 FRYAEGSSMQDC*NVHIQNRKARPR*SSLGWD 236
+ + E +Q C N+ +N +A R SS GWD
Sbjct: 41 YHHLEKGLLQQCFNLVKKNMEALYRQSSFGWD 72
>SPAC23G3.08c |ubp7||ubiquitin C-terminal hydrolase
Ubp7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 875
Score = 25.4 bits (53), Expect = 4.8
Identities = 10/17 (58%), Positives = 14/17 (82%)
Frame = +3
Query: 303 VKREDYQLTDISDDGYL 353
+KREDY+LT ++ GYL
Sbjct: 91 IKREDYELTLCANCGYL 107
>SPBC15C4.02 |||ABC1 kinase family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 594
Score = 25.0 bits (52), Expect = 6.3
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = +3
Query: 255 KYEDICPSTHNMDVPHVKRED 317
K +D CPST D+ H+ R D
Sbjct: 186 KLQDRCPSTSLKDIDHLFRVD 206
>SPAC13A11.04c |ubp8||ubiquitin C-terminal hydrolase
Ubp8|Schizosaccharomyces pombe|chr 1|||Manual
Length = 449
Score = 24.6 bits (51), Expect = 8.4
Identities = 12/49 (24%), Positives = 22/49 (44%), Gaps = 1/49 (2%)
Frame = +1
Query: 109 PMQCSALRKNGFVMLKGRPCKIVEMSTSKTGK-HGHAKVHLVGIDIFNG 252
P +CS ++ ++ C V G+ H H++G+D+ NG
Sbjct: 35 PRRCSTCKRINKRSIRCLSCHSVGCLWGHHGEEHAMEHTHMIGVDVKNG 83
>SPAC57A7.04c |pabp||mRNA export shuttling protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 653
Score = 24.6 bits (51), Expect = 8.4
Identities = 12/40 (30%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Frame = +1
Query: 124 ALRKNGFVMLKGRPCKIV-EMSTSKTGKHGHAKVHLVGID 240
AL + + ++KGRPC+I+ K G V + +D
Sbjct: 137 ALDELNYTLIKGRPCRIMWSQRDPSLRKMGTGNVFIKNLD 176
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,107,721
Number of Sequences: 5004
Number of extensions: 43090
Number of successful extensions: 152
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 143
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 150
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 196153982
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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