Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0271.Seq
(499 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0093 + 702223-702348,703434-703556,703646-703702,703797-70... 111 2e-25
07_03_1141 - 24264534-24264635,24265542-24265616,24265709-242657... 102 1e-22
03_06_0030 + 31161821-31161927,31163700-31163934,31164064-311648... 94 6e-20
12_02_0477 + 19503678-19503803,19504381-19504422,19504631-195046... 93 1e-19
07_01_0904 + 7609863-7610198,7610320-7610415,7610564-7610659 52 2e-07
04_03_0804 - 19844059-19844777,19844914-19844995,19846580-19846585 33 0.17
07_03_0434 + 18175560-18175695,18176068-18176177,18176553-181766... 31 0.68
04_01_0576 + 7466032-7466802,7468382-7468444,7469043-7469122,746... 31 0.68
01_06_1303 - 36132588-36132710,36133879-36134103,36134318-361347... 30 0.90
08_02_0861 - 21974524-21975224,21975307-21975467,21975563-21976695 29 2.1
08_02_0610 + 19307537-19308011,19308187-19310846 29 2.1
05_01_0297 - 2314687-2316021 29 2.1
03_02_0360 - 7796799-7796816,7797477-7797587,7797760-7798068 29 2.7
08_02_0417 - 16904476-16904662,16904846-16905029,16905150-169058... 28 3.6
08_02_0733 + 20546072-20546325,20546924-20547017,20547441-205476... 28 4.8
01_05_0423 + 22032940-22033695 27 6.3
11_01_0035 - 256087-256185,256287-256430,256521-256632,256777-25... 27 8.4
08_01_0815 - 7914634-7914740,7915262-7915357,7922268-7922328,792... 27 8.4
06_01_1174 - 10025086-10027217,10027271-10027333,10027704-10027866 27 8.4
06_01_0437 + 3101449-3101521,3101872-3102232,3103766-3103958,310... 27 8.4
05_05_0230 - 23476919-23477372,23477656-23477695,23478578-234787... 27 8.4
03_01_0578 + 4270835-4271482,4271763-4272140,4272353-4272444,427... 27 8.4
02_05_0967 - 33148283-33148524,33148602-33148881,33148959-331491... 27 8.4
02_01_0363 - 2612873-2613814 27 8.4
02_01_0358 - 2575858-2576796 27 8.4
>07_01_0093 +
702223-702348,703434-703556,703646-703702,703797-703871,
704105-704212
Length = 162
Score = 111 bits (268), Expect = 2e-25
Identities = 48/77 (62%), Positives = 61/77 (79%), Gaps = 1/77 (1%)
Frame = +1
Query: 49 MGDIEDTHFET-GDSGASATFPMQCSALRKNGFVMLKGRPCKIVEMSTSKTGKHGHAKVH 225
M D E+ HFE+ D+GAS T+P Q +RKNG++++K RPCK+VE+STSKTGKHGHAK H
Sbjct: 1 MSDSEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCH 60
Query: 226 LVGIDIFNGKSMKISVP 276
VGIDIFNGK ++ VP
Sbjct: 61 FVGIDIFNGKKLEDIVP 77
Score = 88.6 bits (210), Expect = 2e-18
Identities = 39/80 (48%), Positives = 60/80 (75%), Gaps = 2/80 (2%)
Frame = +3
Query: 255 KYEDICPSTHNMDVPHVKREDYQLTDISDDGYLTLMADNGDLREDLKIP-DGDLGXQLRX 431
K EDI PS+HN DVPHV R DYQL DIS+DG+++L+ ++G+ ++DL++P D L Q++
Sbjct: 71 KLEDIVPSSHNCDVPHVDRTDYQLIDISEDGFVSLLTESGNTKDDLRLPTDDTLTNQIKN 130
Query: 432 DF-DSGKELLCTVLKSCGEE 488
F + GK+++ TV+ + GEE
Sbjct: 131 GFGEEGKDMILTVMSAMGEE 150
>07_03_1141 -
24264534-24264635,24265542-24265616,24265709-24265765,
24265903-24266025,24266509-24266520,24267014-24267157,
24267606-24267626
Length = 177
Score = 102 bits (245), Expect = 1e-22
Identities = 47/81 (58%), Positives = 60/81 (74%), Gaps = 5/81 (6%)
Frame = +1
Query: 49 MGDIEDTHFET-GDSGASATFPMQCSALRKNGFVMLKGRPCK----IVEMSTSKTGKHGH 213
M D E+ HFE+ D+GAS T+P Q +RKNG++++K RPCK +VE+STSKTGKHGH
Sbjct: 14 MSDSEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKNRPCKGFGKVVEVSTSKTGKHGH 73
Query: 214 AKVHLVGIDIFNGKSMKISVP 276
AK H V IDIFNGK ++ VP
Sbjct: 74 AKCHFVAIDIFNGKKLEDIVP 94
Score = 90.6 bits (215), Expect = 6e-19
Identities = 39/79 (49%), Positives = 59/79 (74%), Gaps = 1/79 (1%)
Frame = +3
Query: 255 KYEDICPSTHNMDVPHVKREDYQLTDISDDGYLTLMADNGDLREDLKIP-DGDLGXQLRX 431
K EDI PS+HN DVPHV R +YQL DIS+DG+++L+ ++G+ ++DL++P D L Q++
Sbjct: 88 KLEDIVPSSHNCDVPHVNRTEYQLIDISEDGFVSLLTESGNTKDDLRLPTDDSLLGQIKT 147
Query: 432 DFDSGKELLCTVLKSCGEE 488
F GK+L+ TV+ + GEE
Sbjct: 148 GFGEGKDLVVTVMSAMGEE 166
>03_06_0030 + 31161821-31161927,31163700-31163934,31164064-31164826,
31165816-31167650,31169294-31169424,31169993-31170075,
31170426-31170680,31171125-31171220,31171695-31171775,
31171811-31171968,31172434-31172534,31172614-31172629,
31173390-31173439,31174558-31174588,31175156-31175305,
31176135-31176173,31176288-31176410,31176496-31176552,
31176837-31176911,31177003-31177107
Length = 1496
Score = 93.9 bits (223), Expect = 6e-20
Identities = 47/90 (52%), Positives = 59/90 (65%), Gaps = 14/90 (15%)
Frame = +1
Query: 49 MGDIEDTHFET-GDSGASATFPMQCSALRKNGFVMLKGRPCK-------------IVEMS 186
M D E+ HFE+ D+GAS T+P Q +RKNG +++K RPCK +VE+S
Sbjct: 1323 MSDSEEHHFESKADAGASKTYPQQAGTIRKNGHIVIKNRPCKWSGNHASLLVDTKVVEVS 1382
Query: 187 TSKTGKHGHAKVHLVGIDIFNGKSMKISVP 276
TSKTGKHGHAK H V IDIFNGK ++ VP
Sbjct: 1383 TSKTGKHGHAKCHFVAIDIFNGKKLEDIVP 1412
Score = 90.2 bits (214), Expect = 8e-19
Identities = 40/79 (50%), Positives = 58/79 (73%), Gaps = 1/79 (1%)
Frame = +3
Query: 255 KYEDICPSTHNMDVPHVKREDYQLTDISDDGYLTLMADNGDLREDLKIP-DGDLGXQLRX 431
K EDI PS+HN DVPHV R DYQL DIS+DG+++L+ ++G ++DL++P D L Q++
Sbjct: 1406 KLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTESGGTKDDLRLPSDEALLTQIKD 1465
Query: 432 DFDSGKELLCTVLKSCGEE 488
F GK+L+ TV+ + GEE
Sbjct: 1466 GFAEGKDLIVTVMSAMGEE 1484
>12_02_0477 +
19503678-19503803,19504381-19504422,19504631-19504684,
19504946-19505068,19505154-19505210,19505299-19505373,
19505925-19506026
Length = 192
Score = 93.1 bits (221), Expect = 1e-19
Identities = 40/79 (50%), Positives = 60/79 (75%), Gaps = 1/79 (1%)
Frame = +3
Query: 255 KYEDICPSTHNMDVPHVKREDYQLTDISDDGYLTLMADNGDLREDLKIP-DGDLGXQLRX 431
K EDI PS+HN DVPHV R +YQL DIS+DG+++L+ +NG+ ++DL++P D +L Q++
Sbjct: 103 KLEDIVPSSHNCDVPHVNRTEYQLIDISEDGFVSLLTENGNTKDDLRLPTDDNLLSQIKD 162
Query: 432 DFDSGKELLCTVLKSCGEE 488
F GK+L+ TV+ + GEE
Sbjct: 163 GFGEGKDLVVTVMSAMGEE 181
Score = 55.6 bits (128), Expect(2) = 7e-19
Identities = 24/36 (66%), Positives = 28/36 (77%)
Frame = +1
Query: 169 KIVEMSTSKTGKHGHAKVHLVGIDIFNGKSMKISVP 276
K+VE+STSKTGKHGHAK H V IDIF K ++ VP
Sbjct: 74 KVVEVSTSKTGKHGHAKCHFVAIDIFTAKKLEDIVP 109
Score = 55.2 bits (127), Expect(2) = 7e-19
Identities = 22/42 (52%), Positives = 31/42 (73%), Gaps = 1/42 (2%)
Frame = +1
Query: 49 MGDIEDTHFET-GDSGASATFPMQCSALRKNGFVMLKGRPCK 171
M D E+ HFE+ D+GAS T+P Q +RKNG++++K RPCK
Sbjct: 1 MSDSEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKNRPCK 42
>07_01_0904 + 7609863-7610198,7610320-7610415,7610564-7610659
Length = 175
Score = 52.4 bits (120), Expect = 2e-07
Identities = 24/63 (38%), Positives = 44/63 (69%), Gaps = 2/63 (3%)
Frame = +3
Query: 300 HVKREDYQLTDISDDG-YLTLMADNGDLREDLKIPDGD-LGXQLRXDFDSGKELLCTVLK 473
H+ R +YQL DIS+DG +++L+ ++G+ ++DL +P D L Q++ F GK+++ TV+
Sbjct: 46 HMNRTNYQLIDISEDGLFVSLLTESGNTKDDLGLPTYDNLLGQIKTGFGEGKDVVVTVMS 105
Query: 474 SCG 482
+ G
Sbjct: 106 AMG 108
>04_03_0804 - 19844059-19844777,19844914-19844995,19846580-19846585
Length = 268
Score = 32.7 bits (71), Expect = 0.17
Identities = 15/38 (39%), Positives = 17/38 (44%)
Frame = +2
Query: 89 PGPQPPSPCNVRPCVKTVSLC*RVVHARLLKCPHPKPE 202
P PQPP PC PC K C + C PKP+
Sbjct: 81 PLPQPPPPCKPPPCEKPPEDC-KPKPCHCCSCEKPKPK 117
>07_03_0434 +
18175560-18175695,18176068-18176177,18176553-18176616,
18176839-18176915,18177152-18177223,18178337-18178456
Length = 192
Score = 30.7 bits (66), Expect = 0.68
Identities = 14/40 (35%), Positives = 25/40 (62%)
Frame = +3
Query: 291 DVPHVKREDYQLTDISDDGYLTLMADNGDLREDLKIPDGD 410
D P+ RE +++ ++ D Y+T D+G L ED+K+ G+
Sbjct: 38 DFPNFIREGFEVKVVTSDNYIT--RDSGLLYEDIKVGTGN 75
>04_01_0576 +
7466032-7466802,7468382-7468444,7469043-7469122,
7469505-7469622,7470035-7470067,7470400-7470474,
7470887-7471043,7471142-7471230,7472041-7472294,
7472977-7473148,7473250-7473333,7473626-7473730,
7474055-7474363,7474622-7474756,7476236-7476317,
7476423-7476502,7476622-7476783,7477071-7477138,
7478422-7478502,7478634-7478760,7478816-7478879,
7480808-7480854,7481042-7481335
Length = 1149
Score = 30.7 bits (66), Expect = 0.68
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = +2
Query: 50 WVTSKTHTSRPETPGPQPPSPCNV 121
W+T T P+ P P PP PC+V
Sbjct: 52 WLTWPPPTPLPDAPPPPPPHPCDV 75
>01_06_1303 -
36132588-36132710,36133879-36134103,36134318-36134713,
36135352-36135547,36135591-36135740,36135818-36135924,
36135987-36136094,36136354-36136435,36136436-36136536,
36136778-36136996,36137455-36137583,36137665-36137742,
36137816-36137929,36138071-36138230,36139224-36139441
Length = 801
Score = 30.3 bits (65), Expect = 0.90
Identities = 19/59 (32%), Positives = 27/59 (45%)
Frame = +1
Query: 10 HIIPDRC*IQNTTMGDIEDTHFETGDSGASATFPMQCSALRKNGFVMLKGRPCKIVEMS 186
H+ +Q ++ D E H T +ATFPM L N + +GR CK V +S
Sbjct: 423 HVADPTSLVQPRSIIDREAMHRGTSIFLPTATFPMFPERLAMNAMSLQQGRGCKSVTVS 481
>08_02_0861 - 21974524-21975224,21975307-21975467,21975563-21976695
Length = 664
Score = 29.1 bits (62), Expect = 2.1
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = +3
Query: 399 PDGDLGXQLRXDFDSGKELLCTVLKSCGE 485
PDGDL ++R +SGKEL L G+
Sbjct: 206 PDGDLKDKMRDAMESGKELTSNALALIGK 234
>08_02_0610 + 19307537-19308011,19308187-19310846
Length = 1044
Score = 29.1 bits (62), Expect = 2.1
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = -2
Query: 75 EVCVFDVTHCCVLNLTTVRNDM 10
+VC FD+ CC L T+ NDM
Sbjct: 835 DVCHFDLRTCCALPPATLENDM 856
>05_01_0297 - 2314687-2316021
Length = 444
Score = 29.1 bits (62), Expect = 2.1
Identities = 20/53 (37%), Positives = 28/53 (52%)
Frame = +3
Query: 324 LTDISDDGYLTLMADNGDLREDLKIPDGDLGXQLRXDFDSGKELLCTVLKSCG 482
+ D + +G L + AD D+R + DGD G +LR F S +LL V S G
Sbjct: 91 VVDCTGEGVLFVEAD-ADVRLEELEEDGDGGGELRPPFPSMDQLLLDVEGSGG 142
>03_02_0360 - 7796799-7796816,7797477-7797587,7797760-7798068
Length = 145
Score = 28.7 bits (61), Expect = 2.7
Identities = 14/44 (31%), Positives = 19/44 (43%), Gaps = 1/44 (2%)
Frame = +2
Query: 65 THTSRPETPGPQPPSPCNVRP-CVKTVSLC*RVVHARLLKCPHP 193
T PE P PP C + P C C ++ +LL+ HP
Sbjct: 3 TAKQAPENESPPPPPHCWIYPECTLVTRSCCLLLRLKLLRHGHP 46
>08_02_0417 -
16904476-16904662,16904846-16905029,16905150-16905897,
16906003-16906227,16906318-16906485,16906803-16907453
Length = 720
Score = 28.3 bits (60), Expect = 3.6
Identities = 24/90 (26%), Positives = 34/90 (37%)
Frame = +2
Query: 56 TSKTHTSRPETPGPQPPSPCNVRPCVKTVSLC*RVVHARLLKCPHPKPESTATLKFTWLG 235
+S T + TP P PPSP + V L V A P P +T++L G
Sbjct: 544 SSATPSPTARTPSPAPPSPIATKTSTSVV-LSLAAVRATSPATSSP-PRATSSLPLVGAG 601
Query: 236 LISSMVKV*RYLSLHTQHGRTPREARRLPT 325
+ Q G + EA++L T
Sbjct: 602 SSGPSTHEKKNRKKRAQKGDSDVEAKKLKT 631
>08_02_0733 +
20546072-20546325,20546924-20547017,20547441-20547624,
20547722-20547831,20548328-20548423,20548525-20548679,
20548743-20548986,20549159-20549314,20549600-20549829,
20552213-20552316,20552420-20552505,20552776-20553066,
20553383-20553475,20553640-20553735,20553838-20553939,
20554196-20554266,20554784-20555035,20555786-20556529,
20557038-20557119,20557192-20557347,20557446-20557655,
20558282-20558665
Length = 1397
Score = 27.9 bits (59), Expect = 4.8
Identities = 16/53 (30%), Positives = 28/53 (52%)
Frame = +1
Query: 82 GDSGASATFPMQCSALRKNGFVMLKGRPCKIVEMSTSKTGKHGHAKVHLVGID 240
G SG+ + + SA+ ++ F + + K+VEM ++ K + KVH G D
Sbjct: 543 GTSGSKCS--LWLSAIVRHMFTLYDFKLAKLVEMESALEDKSKNVKVHAEGYD 593
>01_05_0423 + 22032940-22033695
Length = 251
Score = 27.5 bits (58), Expect = 6.3
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = +2
Query: 56 TSKTHTSRPETPGPQPPSPCNVRPC 130
TS T T+ P P P PP P + + C
Sbjct: 17 TSNTSTTPPPQPPPPPPPPPHPQAC 41
>11_01_0035 -
256087-256185,256287-256430,256521-256632,256777-256958,
257038-257169,257297-258589,259133-259837,260465-260549,
260604-260650,260810-260900,261838-262101,262195-262309,
262455-262570,262713-262847,262969-263036,263292-263411
Length = 1235
Score = 27.1 bits (57), Expect = 8.4
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = +3
Query: 333 ISDDGYLTLMADNGDLREDLKIP 401
+ DDG + M NGD RE LK P
Sbjct: 92 VKDDGVINSMTRNGDRRELLKGP 114
>08_01_0815 -
7914634-7914740,7915262-7915357,7922268-7922328,
7922365-7923621
Length = 506
Score = 27.1 bits (57), Expect = 8.4
Identities = 16/53 (30%), Positives = 28/53 (52%)
Frame = -3
Query: 392 EVLTQVTIVSHQGQVAIIRDISQLVVFALHVGYVHVVCGGTDIFILLPLKISI 234
+VL +T+V +A + ++ A+H + VVCGG +F+ L L+ I
Sbjct: 455 DVLKNLTVVL----LAYMHSQGGFILGAVHNPILLVVCGGDTLFLSLQLRFGI 503
>06_01_1174 - 10025086-10027217,10027271-10027333,10027704-10027866
Length = 785
Score = 27.1 bits (57), Expect = 8.4
Identities = 15/44 (34%), Positives = 25/44 (56%)
Frame = -3
Query: 254 LPLKISIPTK*TLAWPCFPVLDVDISTILHGRPFSITKPFLRRA 123
L L +++PT+ + VL D+STI + P +TK F+ R+
Sbjct: 204 LQLALNVPTEESSLTFGDRVLKNDLSTIRNDSPLLLTKTFMHRS 247
>06_01_0437 +
3101449-3101521,3101872-3102232,3103766-3103958,
3104051-3104848,3104997-3105143,3106024-3106377
Length = 641
Score = 27.1 bits (57), Expect = 8.4
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = -2
Query: 366 QPSGSGSHHPRYQSVGSLRASRGVRPCCVWR 274
+PSG+ + P Q +L +RG R C VWR
Sbjct: 22 RPSGTANQSPNSQIGQTL--TRGPRTCAVWR 50
>05_05_0230 -
23476919-23477372,23477656-23477695,23478578-23478700,
23479114-23479151,23479289-23479674,23479875-23481053,
23481805-23481928,23482733-23482779
Length = 796
Score = 27.1 bits (57), Expect = 8.4
Identities = 12/23 (52%), Positives = 16/23 (69%)
Frame = +2
Query: 59 SKTHTSRPETPGPQPPSPCNVRP 127
S +SRP +PGP+P +P VRP
Sbjct: 308 SSAPSSRPSSPGPRPRAP--VRP 328
>03_01_0578 +
4270835-4271482,4271763-4272140,4272353-4272444,
4272637-4273240
Length = 573
Score = 27.1 bits (57), Expect = 8.4
Identities = 17/65 (26%), Positives = 27/65 (41%)
Frame = +2
Query: 62 KTHTSRPETPGPQPPSPCNVRPCVKTVSLC*RVVHARLLKCPHPKPESTATLKFTWLGLI 241
K + + P TP P PP P P ++ + P K T T+ +W L
Sbjct: 277 KLYKTSPPTPTPTPPPPAMTSPPKLNLAAKPNGTSGTVTSTPTVKRRVTETV--SWDSLP 334
Query: 242 SSMVK 256
+S++K
Sbjct: 335 TSLIK 339
>02_05_0967 -
33148283-33148524,33148602-33148881,33148959-33149151,
33149244-33149324,33149395-33149520,33149758-33150137,
33150367-33150394,33150816-33150979,33151920-33152039,
33152168-33152416
Length = 620
Score = 27.1 bits (57), Expect = 8.4
Identities = 9/27 (33%), Positives = 18/27 (66%)
Frame = -2
Query: 327 SVGSLRASRGVRPCCVWRDRYLHTFTI 247
++ S+R++ R CC+WR +Y+ T +
Sbjct: 85 AIHSMRSNL-TRKCCLWRHKYIATIVV 110
>02_01_0363 - 2612873-2613814
Length = 313
Score = 27.1 bits (57), Expect = 8.4
Identities = 9/25 (36%), Positives = 13/25 (52%)
Frame = +2
Query: 41 TQQWVTSKTHTSRPETPGPQPPSPC 115
+ +W + +P P P PPSPC
Sbjct: 96 SDKWEVGDNYLWQPLPPPPPPPSPC 120
>02_01_0358 - 2575858-2576796
Length = 312
Score = 27.1 bits (57), Expect = 8.4
Identities = 9/25 (36%), Positives = 13/25 (52%)
Frame = +2
Query: 41 TQQWVTSKTHTSRPETPGPQPPSPC 115
+ +W + +P P P PPSPC
Sbjct: 96 SDKWEVGDNYLWQPLPPPPPPPSPC 120
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,600,486
Number of Sequences: 37544
Number of extensions: 327193
Number of successful extensions: 1354
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 1251
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1337
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1047416480
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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