Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0271.Seq
         (499 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z49967-1|CAA90247.1|  161|Caenorhabditis elegans Hypothetical pr...   121   3e-28
Z27079-13|CAA81597.2|  195|Caenorhabditis elegans Hypothetical p...   109   1e-24
CU457743-2|CAM36365.1|  695|Caenorhabditis elegans Hypothetical ...    31   0.46 
AY204179-1|AAO39183.1|  486|Caenorhabditis elegans nuclear recep...    30   0.81 
AF332209-1|AAK17980.1|  350|Caenorhabditis elegans nuclear recep...    30   0.81 
AF078783-3|AAN63404.1|  504|Caenorhabditis elegans Nuclear hormo...    30   0.81 
AF078783-2|AAK82901.1|  486|Caenorhabditis elegans Nuclear hormo...    30   0.81 
AF003386-14|AAK82896.1|  811|Caenorhabditis elegans Hypothetical...    29   1.4  
U40958-5|AAA81764.1|  654|Caenorhabditis elegans Hypothetical pr...    28   4.3  
Z74031-2|CAA98454.2|  568|Caenorhabditis elegans Hypothetical pr...    27   5.7  
Z70310-6|CAE17904.1|  293|Caenorhabditis elegans Hypothetical pr...    27   5.7  
U43375-5|AAA83622.1| 1035|Caenorhabditis elegans Hypothetical pr...    27   5.7  
U39849-8|AAA81050.1|  479|Caenorhabditis elegans Hypothetical pr...    27   10.0 
AF039710-9|AAB96685.2|  172|Caenorhabditis elegans Hypothetical ...    27   10.0 

>Z49967-1|CAA90247.1|  161|Caenorhabditis elegans Hypothetical
           protein F54C9.1 protein.
          Length = 161

 Score =  121 bits (291), Expect = 3e-28
 Identities = 54/72 (75%), Positives = 60/72 (83%)
 Frame = +1

Query: 61  EDTHFETGDSGASATFPMQCSALRKNGFVMLKGRPCKIVEMSTSKTGKHGHAKVHLVGID 240
           +D HF TGDSGA+ATFP QCSALRKN  VM+KGRPCKIVEMSTSKTGKHGHAKVH+V ID
Sbjct: 7   DDEHFHTGDSGAAATFPKQCSALRKNEHVMIKGRPCKIVEMSTSKTGKHGHAKVHMVAID 66

Query: 241 IFNGKSMKISVP 276
           IF  K ++   P
Sbjct: 67  IFTSKKLEDICP 78



 Score = 80.2 bits (189), Expect = 8e-16
 Identities = 40/83 (48%), Positives = 58/83 (69%), Gaps = 2/83 (2%)
 Frame = +3

Query: 255 KYEDICPSTHNMDVPHVKREDYQLTDISDDGYLTLM-ADNGDLREDLKIPDGDLGXQLRX 431
           K EDICPSTHNMDVP VKR +Y L  I DDGY +LM  ++ + ++DLK+PD +LG Q+R 
Sbjct: 72  KLEDICPSTHNMDVPVVKRREYLLMAI-DDGYCSLMDPESCEQKDDLKLPDTELGQQIRD 130

Query: 432 DFDSGK-ELLCTVLKSCGEECVI 497
            ++  +  +L  V+ + GEE ++
Sbjct: 131 AYEKDEGSVLVQVVSAIGEEAIL 153


>Z27079-13|CAA81597.2|  195|Caenorhabditis elegans Hypothetical
           protein T05G5.10 protein.
          Length = 195

 Score =  109 bits (262), Expect = 1e-24
 Identities = 48/72 (66%), Positives = 59/72 (81%)
 Frame = +1

Query: 61  EDTHFETGDSGASATFPMQCSALRKNGFVMLKGRPCKIVEMSTSKTGKHGHAKVHLVGID 240
           ++  F++ +SGA+ATFP QCSALRKN  VM++GRPCKIVEMSTSKTGKHGHAKVH+V ID
Sbjct: 41  DEEQFDSAESGAAATFPKQCSALRKNEHVMIRGRPCKIVEMSTSKTGKHGHAKVHMVAID 100

Query: 241 IFNGKSMKISVP 276
           IF  K ++   P
Sbjct: 101 IFTTKKLEDICP 112



 Score = 82.6 bits (195), Expect = 1e-16
 Identities = 40/83 (48%), Positives = 59/83 (71%), Gaps = 2/83 (2%)
 Frame = +3

Query: 255 KYEDICPSTHNMDVPHVKREDYQLTDISDDGYLTLM-ADNGDLREDLKIPDGDLGXQLRX 431
           K EDICPSTHNMDVP VKR +Y L  I +DG+ +LM  ++ +L++DLK+P+GDLG  +R 
Sbjct: 106 KLEDICPSTHNMDVPVVKRREYILMSI-EDGFCSLMDPESCELKDDLKMPEGDLGNTIRE 164

Query: 432 DFDSGK-ELLCTVLKSCGEECVI 497
             +  +  +L  V+ +CGEE ++
Sbjct: 165 ALEKDEGSVLVQVVAACGEEAIL 187


>CU457743-2|CAM36365.1|  695|Caenorhabditis elegans Hypothetical
           protein K09E10.2 protein.
          Length = 695

 Score = 31.1 bits (67), Expect = 0.46
 Identities = 21/72 (29%), Positives = 37/72 (51%), Gaps = 3/72 (4%)
 Frame = +3

Query: 285 NMDVPHVKREDYQLTDI--SDDGYLTLMADNGDLREDLKIPDGDLGXQLRXD-FDSGKEL 455
           N  +P +K++ Y L     ++ GY+  +   GDL+   KI D      LR D ++ G+  
Sbjct: 573 NKFIPFIKKKLYILDSFPRANSGYIARVP--GDLKNGKKIEDISKA-MLRPDGYERGRLR 629

Query: 456 LCTVLKSCGEEC 491
              ++K CG++C
Sbjct: 630 HAALVKECGDKC 641


>AY204179-1|AAO39183.1|  486|Caenorhabditis elegans nuclear receptor
           NHR-80 protein.
          Length = 486

 Score = 30.3 bits (65), Expect = 0.81
 Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 5/44 (11%)
 Frame = +2

Query: 26  VVKFKTQQWVTSKTH-----TSRPETPGPQPPSPCNVRPCVKTV 142
           V+K  T + ++S T      T+   TPGP P +PC+  P V T+
Sbjct: 149 VIKTPTPRKISSSTSFSASTTTNYSTPGPSPMAPCSAGPDVLTL 192


>AF332209-1|AAK17980.1|  350|Caenorhabditis elegans nuclear receptor
           NHR-80 protein.
          Length = 350

 Score = 30.3 bits (65), Expect = 0.81
 Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 5/44 (11%)
 Frame = +2

Query: 26  VVKFKTQQWVTSKTH-----TSRPETPGPQPPSPCNVRPCVKTV 142
           V+K  T + ++S T      T+   TPGP P +PC+  P V T+
Sbjct: 13  VIKTPTPRKISSSTSFSASTTTNYSTPGPSPMAPCSAGPDVLTL 56


>AF078783-3|AAN63404.1|  504|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 80, isoform b protein.
          Length = 504

 Score = 30.3 bits (65), Expect = 0.81
 Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 5/44 (11%)
 Frame = +2

Query: 26  VVKFKTQQWVTSKTH-----TSRPETPGPQPPSPCNVRPCVKTV 142
           V+K  T + ++S T      T+   TPGP P +PC+  P V T+
Sbjct: 167 VIKTPTPRKISSSTSFSASTTTNYSTPGPSPMAPCSAGPDVLTL 210


>AF078783-2|AAK82901.1|  486|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 80, isoform a protein.
          Length = 486

 Score = 30.3 bits (65), Expect = 0.81
 Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 5/44 (11%)
 Frame = +2

Query: 26  VVKFKTQQWVTSKTH-----TSRPETPGPQPPSPCNVRPCVKTV 142
           V+K  T + ++S T      T+   TPGP P +PC+  P V T+
Sbjct: 149 VIKTPTPRKISSSTSFSASTTTNYSTPGPSPMAPCSAGPDVLTL 192


>AF003386-14|AAK82896.1|  811|Caenorhabditis elegans Hypothetical
           protein F59E12.1 protein.
          Length = 811

 Score = 29.5 bits (63), Expect = 1.4
 Identities = 12/24 (50%), Positives = 13/24 (54%)
 Frame = +2

Query: 56  TSKTHTSRPETPGPQPPSPCNVRP 127
           T K  T R E+P P PP P   RP
Sbjct: 358 TEKPETPRAESPDPLPPPPSKKRP 381


>U40958-5|AAA81764.1|  654|Caenorhabditis elegans Hypothetical
           protein F09F9.4 protein.
          Length = 654

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 10/31 (32%), Positives = 19/31 (61%)
 Frame = -3

Query: 143 KPFLRRAEHCMGKVAEAPESPVSKCVSSMSP 51
           +P  +R+++C G + E  E  ++KC  +M P
Sbjct: 345 EPVPKRSKYCDGPLIETQECTLTKCPEAMMP 375


>Z74031-2|CAA98454.2|  568|Caenorhabditis elegans Hypothetical
           protein F32D8.2 protein.
          Length = 568

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 7/52 (13%)
 Frame = +3

Query: 261 EDICPSTHNMDVPHVKREDYQLT------DISDDGYLTLMADN-GDLREDLK 395
           ED+   T +    H+ R + ++       D+S DGYLTL + N  DL  D++
Sbjct: 81  EDVFGLTPDKSKQHIVRGECKINELNEKVDLSSDGYLTLRSKNTNDLPSDIR 132


>Z70310-6|CAE17904.1|  293|Caenorhabditis elegans Hypothetical
           protein R11A8.8 protein.
          Length = 293

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 12/39 (30%), Positives = 19/39 (48%)
 Frame = +3

Query: 345 GYLTLMADNGDLREDLKIPDGDLGXQLRXDFDSGKELLC 461
           GYL      GD ++++K+ +G    Q+  D D  K   C
Sbjct: 251 GYLPQQPKKGDKKKNIKLKEGRTEHQIVSDIDPAKLRAC 289


>U43375-5|AAA83622.1| 1035|Caenorhabditis elegans Hypothetical
           protein K09C4.10 protein.
          Length = 1035

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 10/20 (50%), Positives = 11/20 (55%)
 Frame = -1

Query: 310 RFTWGTSMLCVEGQISSYFY 251
           +F W TS LCV      YFY
Sbjct: 279 KFLWATSRLCVNENTVKYFY 298


>U39849-8|AAA81050.1|  479|Caenorhabditis elegans Hypothetical
           protein C06A8.5 protein.
          Length = 479

 Score = 26.6 bits (56), Expect = 10.0
 Identities = 14/53 (26%), Positives = 25/53 (47%), Gaps = 4/53 (7%)
 Frame = -3

Query: 200 PVLDVDISTILHGRPFSITKPF----LRRAEHCMGKVAEAPESPVSKCVSSMS 54
           P+L   + T+ +GRP    KP     + +  H +  +A  P+ P +K  +  S
Sbjct: 371 PLLAAPLKTLNNGRPSFFIKPKNVEPMPQLGHSLSSIAVTPQKPAAKFTTRSS 423


>AF039710-9|AAB96685.2|  172|Caenorhabditis elegans Hypothetical
           protein C46E10.8 protein.
          Length = 172

 Score = 26.6 bits (56), Expect = 10.0
 Identities = 15/51 (29%), Positives = 24/51 (47%)
 Frame = +1

Query: 70  HFETGDSGASATFPMQCSALRKNGFVMLKGRPCKIVEMSTSKTGKHGHAKV 222
           H ET DSGA A   +   A   +GF  +   P  ++   +S + + G  +V
Sbjct: 86  HLETADSGAHAIPSLGSPAPSSSGFATMIVPPAPLLSAISSGSPQLGDTRV 136


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,096,329
Number of Sequences: 27780
Number of extensions: 262699
Number of successful extensions: 841
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 769
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 837
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 945973702
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)