Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0271.Seq
(499 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
DQ855483-1|ABH88170.1| 117|Apis mellifera chemosensory protein ... 25 0.44
AJ973398-1|CAJ01445.1| 117|Apis mellifera hypothetical protein ... 25 0.44
DQ863218-1|ABI94394.1| 399|Apis mellifera tyramine receptor pro... 23 1.3
DQ863217-1|ABI94393.1| 399|Apis mellifera tyramine receptor pro... 23 1.3
AJ245824-1|CAB76374.1| 399|Apis mellifera G-protein coupled rec... 23 1.3
AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic ac... 23 1.8
DQ026039-1|AAY87898.1| 427|Apis mellifera nicotinic acetylcholi... 22 3.1
EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 21 7.1
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 21 7.1
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 21 7.1
EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 21 7.1
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 21 7.1
EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 21 7.1
DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 21 7.1
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 21 7.1
AJ849455-1|CAH60991.1| 366|Apis mellifera twist protein protein. 21 7.1
DQ667187-1|ABG75739.1| 428|Apis mellifera histamine-gated chlor... 21 9.4
>DQ855483-1|ABH88170.1| 117|Apis mellifera chemosensory protein 2
protein.
Length = 117
Score = 25.0 bits (52), Expect = 0.44
Identities = 12/32 (37%), Positives = 20/32 (62%)
Frame = -3
Query: 137 FLRRAEHCMGKVAEAPESPVSKCVSSMSPIVV 42
+LRR C + EAP PV + + S++P+V+
Sbjct: 47 YLRRQLKCA--LGEAPCDPVGRRLKSLAPLVL 76
>AJ973398-1|CAJ01445.1| 117|Apis mellifera hypothetical protein
protein.
Length = 117
Score = 25.0 bits (52), Expect = 0.44
Identities = 12/32 (37%), Positives = 20/32 (62%)
Frame = -3
Query: 137 FLRRAEHCMGKVAEAPESPVSKCVSSMSPIVV 42
+LRR C + EAP PV + + S++P+V+
Sbjct: 47 YLRRQLKCA--LGEAPCDPVGRRLKSLAPLVL 76
>DQ863218-1|ABI94394.1| 399|Apis mellifera tyramine receptor
protein.
Length = 399
Score = 23.4 bits (48), Expect = 1.3
Identities = 12/46 (26%), Positives = 18/46 (39%)
Frame = +2
Query: 182 CPHPKPESTATLKFTWLGLISSMVKV*RYLSLHTQHGRTPREARRL 319
CP P TWLG ++S + Y + + R R R+
Sbjct: 353 CPDCCPSDRMVYFITWLGYVNSALNPLIYTIFNLDYRRAFRRLLRI 398
>DQ863217-1|ABI94393.1| 399|Apis mellifera tyramine receptor
protein.
Length = 399
Score = 23.4 bits (48), Expect = 1.3
Identities = 12/46 (26%), Positives = 18/46 (39%)
Frame = +2
Query: 182 CPHPKPESTATLKFTWLGLISSMVKV*RYLSLHTQHGRTPREARRL 319
CP P TWLG ++S + Y + + R R R+
Sbjct: 353 CPDCCPSDRMVYFITWLGYVNSALNPLIYTIFNLDYRRAFRRLLRI 398
>AJ245824-1|CAB76374.1| 399|Apis mellifera G-protein coupled
receptor protein.
Length = 399
Score = 23.4 bits (48), Expect = 1.3
Identities = 12/46 (26%), Positives = 18/46 (39%)
Frame = +2
Query: 182 CPHPKPESTATLKFTWLGLISSMVKV*RYLSLHTQHGRTPREARRL 319
CP P TWLG ++S + Y + + R R R+
Sbjct: 353 CPDCCPSDRMVYFITWLGYVNSALNPLIYTIFNLDYRRAFRRLLRI 398
>AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha7-1 protein.
Length = 555
Score = 23.0 bits (47), Expect = 1.8
Identities = 9/15 (60%), Positives = 9/15 (60%)
Frame = +2
Query: 56 TSKTHTSRPETPGPQ 100
T H PETPGPQ
Sbjct: 462 TPHHHPHPPETPGPQ 476
>DQ026039-1|AAY87898.1| 427|Apis mellifera nicotinic acetylcholine
receptor beta2subunit protein.
Length = 427
Score = 22.2 bits (45), Expect = 3.1
Identities = 9/15 (60%), Positives = 12/15 (80%)
Frame = -3
Query: 203 FPVLDVDISTILHGR 159
FPVL V I+ +LHG+
Sbjct: 8 FPVLFVIINVLLHGQ 22
>EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 6 protein.
Length = 461
Score = 21.0 bits (42), Expect = 7.1
Identities = 9/24 (37%), Positives = 14/24 (58%)
Frame = -1
Query: 427 RNCXPRSPSGILRSSRRSPLSAIR 356
+N PSG +RS+ +P+S R
Sbjct: 355 KNSAANPPSGYIRSAFGTPISTGR 378
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 5 protein.
Length = 461
Score = 21.0 bits (42), Expect = 7.1
Identities = 9/24 (37%), Positives = 14/24 (58%)
Frame = -1
Query: 427 RNCXPRSPSGILRSSRRSPLSAIR 356
+N PSG +RS+ +P+S R
Sbjct: 355 KNSAANPPSGYIRSAFGTPISTGR 378
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 21.0 bits (42), Expect = 7.1
Identities = 9/24 (37%), Positives = 14/24 (58%)
Frame = -1
Query: 427 RNCXPRSPSGILRSSRRSPLSAIR 356
+N PSG +RS+ +P+S R
Sbjct: 355 KNSAANPPSGYIRSAFGTPISTGR 378
>EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 3 protein.
Length = 461
Score = 21.0 bits (42), Expect = 7.1
Identities = 9/24 (37%), Positives = 14/24 (58%)
Frame = -1
Query: 427 RNCXPRSPSGILRSSRRSPLSAIR 356
+N PSG +RS+ +P+S R
Sbjct: 355 KNSAANPPSGYIRSAFGTPISTGR 378
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 21.0 bits (42), Expect = 7.1
Identities = 9/24 (37%), Positives = 14/24 (58%)
Frame = -1
Query: 427 RNCXPRSPSGILRSSRRSPLSAIR 356
+N PSG +RS+ +P+S R
Sbjct: 355 KNSAANPPSGYIRSAFGTPISTGR 378
>EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 1 protein.
Length = 461
Score = 21.0 bits (42), Expect = 7.1
Identities = 9/24 (37%), Positives = 14/24 (58%)
Frame = -1
Query: 427 RNCXPRSPSGILRSSRRSPLSAIR 356
+N PSG +RS+ +P+S R
Sbjct: 355 KNSAANPPSGYIRSAFGTPISTGR 378
>DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 21.0 bits (42), Expect = 7.1
Identities = 9/24 (37%), Positives = 14/24 (58%)
Frame = -1
Query: 427 RNCXPRSPSGILRSSRRSPLSAIR 356
+N PSG +RS+ +P+S R
Sbjct: 423 KNSAANPPSGYIRSAFGTPISTGR 446
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 21.0 bits (42), Expect = 7.1
Identities = 9/24 (37%), Positives = 14/24 (58%)
Frame = -1
Query: 427 RNCXPRSPSGILRSSRRSPLSAIR 356
+N PSG +RS+ +P+S R
Sbjct: 423 KNSAANPPSGYIRSAFGTPISTGR 446
>AJ849455-1|CAH60991.1| 366|Apis mellifera twist protein protein.
Length = 366
Score = 21.0 bits (42), Expect = 7.1
Identities = 8/13 (61%), Positives = 9/13 (69%)
Frame = +3
Query: 258 YEDICPSTHNMDV 296
YE PSTH MD+
Sbjct: 46 YERFSPSTHLMDL 58
>DQ667187-1|ABG75739.1| 428|Apis mellifera histamine-gated chloride
channel protein.
Length = 428
Score = 20.6 bits (41), Expect = 9.4
Identities = 7/16 (43%), Positives = 8/16 (50%)
Frame = +2
Query: 80 PETPGPQPPSPCNVRP 127
P P P PP P + P
Sbjct: 338 PPKPAPPPPPPSSSGP 353
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 144,170
Number of Sequences: 438
Number of extensions: 3480
Number of successful extensions: 17
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 13618701
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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