Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0270.Seq
(498 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_04_0038 - 15339047-15339230,15339683-15339741,15340031-153401... 48 6e-06
07_03_0406 + 17785046-17785408,17786411-17786479,17786764-177868... 46 2e-05
11_06_0767 + 27121761-27123335,27123701-27123910,27124843-271249... 34 0.055
05_01_0538 + 4646772-4647059,4647462-4647542,4647819-4647890,464... 33 0.096
03_06_0223 + 32481444-32482436 31 0.39
08_01_0661 - 5708088-5708131,5708217-5710048,5710527-5710625,571... 31 0.51
09_04_0416 - 17399059-17399777,17400560-17400704 30 0.90
01_01_0884 - 6956337-6956431,6956514-6957651 30 0.90
07_01_0045 - 357463-357921 30 1.2
04_03_0284 + 13896307-13896765 30 1.2
03_06_0695 - 35599454-35600018,35600445-35600491,35600556-35600672 30 1.2
05_05_0120 + 22520285-22520569 29 1.6
11_01_0319 - 2396835-2396951,2397035-2397105,2397219-2397297,239... 29 2.1
10_08_0911 - 21499196-21499236,21499368-21499488,21499665-214997... 29 2.1
06_03_0619 + 22801576-22802016,22802111-22802596 29 2.7
06_01_0193 - 1491710-1491739,1492194-1492319,1492631-1492766,149... 29 2.7
02_05_0101 - 25824093-25824112,25824734-25824842,25824927-258264... 29 2.7
10_08_0674 + 19788198-19789817 28 3.6
02_01_0316 + 2125283-2125687,2125768-2125881,2125986-2126099,212... 28 3.6
08_01_0108 - 791835-792398 28 4.8
03_05_0629 + 26248960-26249236,26249766-26249894,26250291-262508... 28 4.8
02_05_0040 + 25341418-25341810 28 4.8
01_05_0620 + 23742950-23743794,23745705-23746508,23746593-23747793 28 4.8
11_04_0009 - 12132781-12133272 27 6.3
07_01_0733 + 5570084-5570282,5570395-5570600,5572484-5572624,557... 27 6.3
01_03_0117 + 12684729-12685886,12685978-12686145,12686292-126863... 27 6.3
05_07_0041 + 27261968-27262145,27262160-27262717,27262814-27263589 27 8.4
01_05_0789 + 25231013-25231570,25231684-25231761,25232590-252326... 27 8.4
>01_04_0038 -
15339047-15339230,15339683-15339741,15340031-15340160,
15340248-15340498,15340632-15341225,15342050-15342511
Length = 559
Score = 47.6 bits (108), Expect = 6e-06
Identities = 23/53 (43%), Positives = 31/53 (58%)
Frame = -2
Query: 434 SVDVLMPGVGEIVGGSXRXWDHEEXMEGYKREGIDPSPXYWYTDQRKFGSVPH 276
++DVL+P VGE+VGGS R + + G+ P WY D R+FGSV H
Sbjct: 472 AMDVLVPKVGELVGGSQREERLDLLKTRIQDAGLPLEPYEWYLDLRRFGSVKH 524
>07_03_0406 +
17785046-17785408,17786411-17786479,17786764-17786868,
17787297-17787346,17787363-17787489,17788084-17788221,
17788863-17788940,17789141-17789218,17789318-17789386,
17789720-17789803,17789895-17789981,17790364-17790459,
17790541-17790615,17790762-17790888,17791027-17791142
Length = 553
Score = 46.0 bits (104), Expect = 2e-05
Identities = 21/54 (38%), Positives = 35/54 (64%), Gaps = 1/54 (1%)
Frame = -2
Query: 434 SVDVLMPGVGEIVGGSXRXWDHEEXMEGYKRE-GIDPSPXYWYTDQRKFGSVPH 276
++D+L+P VGE++GGS R + + +E E ++ +WY D R++GSVPH
Sbjct: 466 AMDLLVPRVGELIGGSQRE-ERLDYLEARLDELNLNKDSYWWYLDLRRYGSVPH 518
>11_06_0767 + 27121761-27123335,27123701-27123910,27124843-27124911,
27125387-27125656,27126027-27126377,27126480-27126757,
27126887-27128330
Length = 1398
Score = 34.3 bits (75), Expect = 0.055
Identities = 23/61 (37%), Positives = 29/61 (47%)
Frame = +2
Query: 152 SSGRGAQGVHRSRKRG*RHTSRMWYRSRSQQRKRSNPARSRREAPSRTCAGPYTSSXG*G 331
S G + RS R SR W RSRS+ R S +RSR +PSR+ + Y G
Sbjct: 1225 SRGYDRRSGSRSLSSRSRSRSRSWSRSRSRSRSWSR-SRSRSRSPSRSRSRSYDQGAGPA 1283
Query: 332 R 334
R
Sbjct: 1284 R 1284
>05_01_0538 +
4646772-4647059,4647462-4647542,4647819-4647890,
4648458-4649321
Length = 434
Score = 33.5 bits (73), Expect = 0.096
Identities = 21/59 (35%), Positives = 26/59 (44%)
Frame = +2
Query: 110 YTQRHVIRQNKDDTSSGRGAQGVHRSRKRG*RHTSRMWYRSRSQQRKRSNPARSRREAP 286
Y RH + D R +G R R+ RH SR RSRS+ R RS R +P
Sbjct: 325 YRSRH--SSERQDDRRDRDREG-SRHRRSSSRHRSRSRSRSRSRSRSRSRSRNEERSSP 380
>03_06_0223 + 32481444-32482436
Length = 330
Score = 31.5 bits (68), Expect = 0.39
Identities = 20/68 (29%), Positives = 34/68 (50%)
Frame = +3
Query: 135 KIKTIRRRVEALRACTALGSEGRDTRPGCGTGPGASRGSAQTQPVAAVRHRAELALVRIP 314
K K ++ R+E+L A + PGCG PG+S +T VA +R + ++
Sbjct: 99 KAKVVKLRLESLDRANAANR----SVPGCG--PGSSTDRTRTSVVAGLRKKLRDSMESFS 152
Query: 315 VVRARVDA 338
+RAR+ +
Sbjct: 153 SLRARISS 160
>08_01_0661 -
5708088-5708131,5708217-5710048,5710527-5710625,
5711015-5711508,5711579-5711632,5712597-5712683,
5712684-5712776
Length = 900
Score = 31.1 bits (67), Expect = 0.51
Identities = 15/44 (34%), Positives = 24/44 (54%)
Frame = +3
Query: 129 SGKIKTIRRRVEALRACTALGSEGRDTRPGCGTGPGASRGSAQT 260
S +++ I + + L A A G+ G + PG G G G S GS+ +
Sbjct: 176 SERLEPISQEIVLLEASDASGAAGGPSVPGTGNGHGQSSGSSDS 219
>09_04_0416 - 17399059-17399777,17400560-17400704
Length = 287
Score = 30.3 bits (65), Expect = 0.90
Identities = 14/40 (35%), Positives = 22/40 (55%)
Frame = +2
Query: 188 RKRG*RHTSRMWYRSRSQQRKRSNPARSRREAPSRTCAGP 307
R+RG + +R+R ++RKR+ PA + P R GP
Sbjct: 72 RERGPKEERHPHHRARRKERKRTGPAPAMAMQPPRRKTGP 111
>01_01_0884 - 6956337-6956431,6956514-6957651
Length = 410
Score = 30.3 bits (65), Expect = 0.90
Identities = 22/63 (34%), Positives = 24/63 (38%)
Frame = +3
Query: 138 IKTIRRRVEALRACTALGSEGRDTRPGCGTGPGASRGSAQTQPVAAVRHRAELALVRIPV 317
+K RR E LR +A E D P P S A TQP A A PV
Sbjct: 238 VKVSRRYGERLRFASASEGEETDLEPDPSPSPSPSPSPAPTQPPTAAAAAAVAPAPPQPV 297
Query: 318 VRA 326
V A
Sbjct: 298 VVA 300
>07_01_0045 - 357463-357921
Length = 152
Score = 29.9 bits (64), Expect = 1.2
Identities = 23/63 (36%), Positives = 31/63 (49%)
Frame = +2
Query: 116 QRHVIRQNKDDTSSGRGAQGVHRSRKRG*RHTSRMWYRSRSQQRKRSNPARSRREAPSRT 295
+RH R+ + G GA+G G R S RSR++QR+R + R RR RT
Sbjct: 46 RRHSWRRRRRPWRRG-GARGRAEVVVAGKRRRSWRRRRSRTRQRRRRSRRRRRRR---RT 101
Query: 296 CAG 304
C G
Sbjct: 102 CGG 104
>04_03_0284 + 13896307-13896765
Length = 152
Score = 29.9 bits (64), Expect = 1.2
Identities = 23/63 (36%), Positives = 31/63 (49%)
Frame = +2
Query: 116 QRHVIRQNKDDTSSGRGAQGVHRSRKRG*RHTSRMWYRSRSQQRKRSNPARSRREAPSRT 295
+RH R+ + G GA+G G R S RSR++QR+R + R RR RT
Sbjct: 46 RRHSWRRRRRPWRRG-GARGRAEVVVAGKRRRSWRRRRSRTRQRRRRSRRRRRRR---RT 101
Query: 296 CAG 304
C G
Sbjct: 102 CGG 104
>03_06_0695 - 35599454-35600018,35600445-35600491,35600556-35600672
Length = 242
Score = 29.9 bits (64), Expect = 1.2
Identities = 23/63 (36%), Positives = 31/63 (49%)
Frame = +2
Query: 116 QRHVIRQNKDDTSSGRGAQGVHRSRKRG*RHTSRMWYRSRSQQRKRSNPARSRREAPSRT 295
+RH R+ + G GA+G G R S RSR++QR+R + R RR RT
Sbjct: 136 RRHSWRRRRRPWRRG-GARGRAEVVVAGKRRRSWRRRRSRTRQRRRRSRRRRRRR---RT 191
Query: 296 CAG 304
C G
Sbjct: 192 CGG 194
>05_05_0120 + 22520285-22520569
Length = 94
Score = 29.5 bits (63), Expect = 1.6
Identities = 13/38 (34%), Positives = 18/38 (47%)
Frame = +3
Query: 189 GSEGRDTRPGCGTGPGASRGSAQTQPVAAVRHRAELAL 302
G G D R G A+ G Q +P A RHR +++
Sbjct: 35 GGAGEDGRKGAAATADAAGGQQQARPSPAARHRRAMSV 72
>11_01_0319 -
2396835-2396951,2397035-2397105,2397219-2397297,
2397417-2397458,2397670-2397723,2397836-2397868,
2397959-2398039,2398144-2398230,2398313-2398388,
2398633-2398808,2398912-2399034,2399249-2399361,
2399521-2399632,2400054-2400273,2401986-2402314,
2402408-2402713,2403580-2403878,2404079-2404181,
2404266-2404369,2404840-2404906,2404911-2405076,
2405241-2405956
Length = 1157
Score = 29.1 bits (62), Expect = 2.1
Identities = 19/60 (31%), Positives = 27/60 (45%)
Frame = +2
Query: 113 TQRHVIRQNKDDTSSGRGAQGVHRSRKRG*RHTSRMWYRSRSQQRKRSNPARSRREAPSR 292
T+RH R ++ S G RSR+ +SR R +S +R R RR +P R
Sbjct: 30 TRRHRRRSPSSESCSSSGDDD--RSRRHRHDESSRRRQRDQSHRRDRGGHDERRRRSPQR 87
>10_08_0911 -
21499196-21499236,21499368-21499488,21499665-21499789,
21500187-21500418,21500488-21500668,21501342-21501438,
21501641-21501779,21502024-21502351,21502890-21503137,
21503270-21503543,21504200-21504291,21504451-21504521,
21505091-21505181,21506526-21507380,21507482-21507594,
21508007-21508074,21508655-21508835,21509084-21509186,
21509273-21509379,21510046-21511584,21511661-21511771,
21511856-21511908,21511988-21512063,21512147-21512366,
21512477-21512901,21513193-21513372,21513503-21515474
Length = 2680
Score = 29.1 bits (62), Expect = 2.1
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = -2
Query: 482 SFKQCRAAWTTAASTESVDVLMPGVGE 402
S + W+ A STESV++L+ VGE
Sbjct: 88 SINRTNNVWSEATSTESVEMLLKSVGE 114
>06_03_0619 + 22801576-22802016,22802111-22802596
Length = 308
Score = 28.7 bits (61), Expect = 2.7
Identities = 18/72 (25%), Positives = 35/72 (48%), Gaps = 1/72 (1%)
Frame = +3
Query: 126 LSGKIKTIRRRVEALRA-CTALGSEGRDTRPGCGTGPGASRGSAQTQPVAAVRHRAELAL 302
+ G ++ + RR +A++ AL + +R G GPG+S +T VA + + + +
Sbjct: 84 MDGDVEQVLRRAKAVKGKLEALDRDNATSRKVPGCGPGSSTDRTRTSVVAGLGKKLKDIM 143
Query: 303 VRIPVVRARVDA 338
+R R+ A
Sbjct: 144 DDFQGLRTRMAA 155
>06_01_0193 -
1491710-1491739,1492194-1492319,1492631-1492766,
1493048-1493112,1493213-1493305,1493433-1493498,
1493763-1493843,1493977-1494032,1494692-1494780,
1495340-1495425,1495531-1495647,1496109-1496254,
1496665-1496725,1496831-1496914,1497028-1497135,
1497286-1497388,1497802-1497845,1498100-1498584,
1499417-1499603,1500150-1500362,1501066-1501323
Length = 877
Score = 28.7 bits (61), Expect = 2.7
Identities = 22/63 (34%), Positives = 31/63 (49%)
Frame = +2
Query: 116 QRHVIRQNKDDTSSGRGAQGVHRSRKRG*RHTSRMWYRSRSQQRKRSNPARSRREAPSRT 295
+RH R+ + G GA+G G R S RSR++QR+R + R RR +T
Sbjct: 304 RRHSWRRRRRPWRRG-GARGRAEVVVAGKRRRSWRRRRSRTRQRRRRSRRRRRRR---KT 359
Query: 296 CAG 304
C G
Sbjct: 360 CGG 362
>02_05_0101 -
25824093-25824112,25824734-25824842,25824927-25826429,
25826596-25827333,25827712-25827919,25828455-25830409,
25830868-25830960,25831044-25831100,25831189-25831272,
25831345-25831437,25831622-25832053,25833593-25833933,
25834663-25835215
Length = 2061
Score = 28.7 bits (61), Expect = 2.7
Identities = 23/63 (36%), Positives = 30/63 (47%)
Frame = +2
Query: 116 QRHVIRQNKDDTSSGRGAQGVHRSRKRG*RHTSRMWYRSRSQQRKRSNPARSRREAPSRT 295
+RH R + G GA+G G R S RSR++QR+R + R RR RT
Sbjct: 95 RRHSWRWRRRPWRRG-GARGRAEVVVAGKRRRSWRRRRSRTRQRRRRSRRRRRRR---RT 150
Query: 296 CAG 304
C G
Sbjct: 151 CGG 153
>10_08_0674 + 19788198-19789817
Length = 539
Score = 28.3 bits (60), Expect = 3.6
Identities = 11/27 (40%), Positives = 20/27 (74%)
Frame = -3
Query: 175 ALSASTRRRIVFILPDNMTLCILHSIK 95
A++A+ +R I+F LPD + L +LH ++
Sbjct: 167 AIAAAAQRYILFCLPDLLFLSLLHPLR 193
>02_01_0316 +
2125283-2125687,2125768-2125881,2125986-2126099,
2126271-2126561,2126658-2126768,2127317-2127370,
2127555-2127634,2127912-2128027,2128141-2128382
Length = 508
Score = 28.3 bits (60), Expect = 3.6
Identities = 17/55 (30%), Positives = 25/55 (45%)
Frame = -2
Query: 440 TESVDVLMPGVGEIVGGSXRXWDHEEXMEGYKREGIDPSPXYWYTDQRKFGSVPH 276
+ S DV + G EI+ G+ R E + GID Y D ++G+ PH
Sbjct: 420 SNSFDVFVRGE-EIISGAQRVHVPEVLARQAEERGIDVGSIAAYVDAFRYGAPPH 473
>08_01_0108 - 791835-792398
Length = 187
Score = 27.9 bits (59), Expect = 4.8
Identities = 19/47 (40%), Positives = 24/47 (51%)
Frame = +2
Query: 164 GAQGVHRSRKRG*RHTSRMWYRSRSQQRKRSNPARSRREAPSRTCAG 304
GA+G G R S RSR++QR+R + R RR RTC G
Sbjct: 96 GARGRAEVVVAGKRRRSWRRRRSRTRQRRRRSRRRRRRR---RTCGG 139
>03_05_0629 +
26248960-26249236,26249766-26249894,26250291-26250847,
26250933-26251250
Length = 426
Score = 27.9 bits (59), Expect = 4.8
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = -2
Query: 119 VVYIAFNKAFLLK*FVYLFCWIVFIL 42
V ++AFNK + FV+ FC + IL
Sbjct: 314 VAFVAFNKVMTAQYFVWFFCLLPLIL 339
>02_05_0040 + 25341418-25341810
Length = 130
Score = 27.9 bits (59), Expect = 4.8
Identities = 19/48 (39%), Positives = 23/48 (47%)
Frame = +2
Query: 164 GAQGVHRSRKRG*RHTSRMWYRSRSQQRKRSNPARSRREAPSRTCAGP 307
G GV R R+ R R +R+ S P R RR AP R C+GP
Sbjct: 66 GGAGVPRRRRAAPRR------RCGGSKRRCSGPQR-RRGAPRRRCSGP 106
>01_05_0620 + 23742950-23743794,23745705-23746508,23746593-23747793
Length = 949
Score = 27.9 bits (59), Expect = 4.8
Identities = 11/34 (32%), Positives = 20/34 (58%)
Frame = +3
Query: 96 FIECNIHNVMLSGKIKTIRRRVEALRACTALGSE 197
FI+C ++ LS +I T R++ +AC + G +
Sbjct: 298 FIKCVLYENNLSSRIITTTRKINVSKACCSSGDD 331
>11_04_0009 - 12132781-12133272
Length = 163
Score = 27.5 bits (58), Expect = 6.3
Identities = 15/45 (33%), Positives = 19/45 (42%), Gaps = 1/45 (2%)
Frame = +2
Query: 203 RHTSRMWYRSRSQQRKRSNPARSRREAPSRTC-AGPYTSSXG*GR 334
R W R R + S P++ RR R C +G S G GR
Sbjct: 106 RRRGEAWRRERRDSKIESRPSQRRRVGGRRGCGSGTCAESAGSGR 150
>07_01_0733 + 5570084-5570282,5570395-5570600,5572484-5572624,
5572773-5572949,5573049-5573145,5573575-5573687,
5573774-5573896,5574004-5574075,5575340-5575432,
5575564-5575674,5575767-5575889,5576834-5576890,
5576939-5577022,5577140-5577214,5577418-5577554,
5577719-5577853,5579029-5579168,5579334-5579399,
5579732-5579838,5579910-5579990,5580064-5580138,
5580224-5580325,5581837-5582005,5582090-5582217,
5582596-5582679,5582779-5582879,5583729-5583882,
5583964-5584038,5584112-5584262,5584463-5585078,
5585427-5585487,5585874-5586019,5586104-5586287,
5586363-5586440,5586603-5586931,5587023-5587199,
5587571-5587667,5587742-5587897,5587962-5588198,
5588271-5588354,5588426-5588486,5588762-5588898
Length = 1912
Score = 27.5 bits (58), Expect = 6.3
Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 4/51 (7%)
Frame = -1
Query: 312 VYGPAQVRLGASRRLRAGFERFLCWLLDRYHIRDVCLYPRFL----ERCTP 172
VY ++RLG + +RA FER C L ++ + L PR + E+C P
Sbjct: 1815 VYLDQEIRLGDTEIIRALFERVTCLSLPPKKMK-IYLIPRKIQFVSEKCNP 1864
>01_03_0117 +
12684729-12685886,12685978-12686145,12686292-12686336,
12686438-12687280
Length = 737
Score = 27.5 bits (58), Expect = 6.3
Identities = 12/21 (57%), Positives = 13/21 (61%)
Frame = -2
Query: 467 RAAWTTAASTESVDVLMPGVG 405
RAAW A S ES VL+P G
Sbjct: 346 RAAWKAACSAESATVLVPSDG 366
>05_07_0041 + 27261968-27262145,27262160-27262717,27262814-27263589
Length = 503
Score = 27.1 bits (57), Expect = 8.4
Identities = 15/30 (50%), Positives = 19/30 (63%)
Frame = -3
Query: 352 VTSAKASTLARTTGIRTSASSARCLTAATG 263
V ++ TLA TTG+ ASS R + AATG
Sbjct: 108 VIASSTRTLATTTGV--IASSTRTIAAATG 135
>01_05_0789 +
25231013-25231570,25231684-25231761,25232590-25232659,
25232743-25232812,25233262-25233469,25233546-25233716
Length = 384
Score = 27.1 bits (57), Expect = 8.4
Identities = 15/34 (44%), Positives = 20/34 (58%)
Frame = +3
Query: 135 KIKTIRRRVEALRACTALGSEGRDTRPGCGTGPG 236
++ +RR +EALRA G+EG G G GPG
Sbjct: 94 QLPELRRLLEALRASRGRGAEGE----GGGGGPG 123
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,746,432
Number of Sequences: 37544
Number of extensions: 198837
Number of successful extensions: 834
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 797
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 826
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1047416480
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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