Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0270.Seq
(498 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_24107| Best HMM Match : tRNA-synt_2 (HMM E-Value=3.4e-09) 97 9e-21
SB_48310| Best HMM Match : No HMM Matches (HMM E-Value=.) 97 9e-21
SB_50967| Best HMM Match : No HMM Matches (HMM E-Value=.) 82 3e-16
SB_19464| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.075
SB_40082| Best HMM Match : tRNA-synt_2 (HMM E-Value=8.1e-37) 32 0.30
SB_27758| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 0.92
SB_29377| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.8
SB_53400| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.7
SB_45809| Best HMM Match : Vicilin_N (HMM E-Value=4.5) 28 3.7
SB_20424| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.7
SB_42659| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.5
SB_36083| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.5
SB_27558| Best HMM Match : dsrm (HMM E-Value=9.6e-18) 27 6.5
SB_19884| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.5
SB_18951| Best HMM Match : EGF (HMM E-Value=2.1e-06) 27 6.5
SB_53766| Best HMM Match : MSSP (HMM E-Value=1) 27 6.5
SB_45236| Best HMM Match : PRP38 (HMM E-Value=0) 27 6.5
SB_40626| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.5
SB_34561| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.5
SB_12902| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.5
SB_53060| Best HMM Match : ResIII (HMM E-Value=0.14) 27 8.6
>SB_24107| Best HMM Match : tRNA-synt_2 (HMM E-Value=3.4e-09)
Length = 187
Score = 96.7 bits (230), Expect = 9e-21
Identities = 38/52 (73%), Positives = 46/52 (88%)
Frame = -2
Query: 431 VDVLMPGVGEIVGGSXRXWDHEEXMEGYKREGIDPSPXYWYTDQRKFGSVPH 276
VD+LMPGVGEI+GGS R W ++E +EGYKREGIDP+P +WYTDQRK+GS PH
Sbjct: 101 VDLLMPGVGEIIGGSMRMWKYDELIEGYKREGIDPAPYFWYTDQRKYGSCPH 152
Score = 56.0 bits (129), Expect = 2e-08
Identities = 22/30 (73%), Positives = 24/30 (80%)
Frame = -1
Query: 261 GFERFLCWLLDRYHIRDVCLYPRFLERCTP 172
G ERFL WLL+R HIRDVC YPRF+ RC P
Sbjct: 158 GLERFLTWLLNRQHIRDVCFYPRFVGRCQP 187
>SB_48310| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 87
Score = 96.7 bits (230), Expect = 9e-21
Identities = 38/52 (73%), Positives = 46/52 (88%)
Frame = -2
Query: 431 VDVLMPGVGEIVGGSXRXWDHEEXMEGYKREGIDPSPXYWYTDQRKFGSVPH 276
VD+LMPGVGEI+GGS R W ++E +EGYKREGIDP+P +WYTDQRK+GS PH
Sbjct: 1 VDLLMPGVGEIIGGSMRMWKYDELIEGYKREGIDPAPYFWYTDQRKYGSCPH 52
Score = 56.0 bits (129), Expect = 2e-08
Identities = 22/30 (73%), Positives = 24/30 (80%)
Frame = -1
Query: 261 GFERFLCWLLDRYHIRDVCLYPRFLERCTP 172
G ERFL WLL+R HIRDVC YPRF+ RC P
Sbjct: 58 GLERFLTWLLNRQHIRDVCFYPRFVGRCQP 87
>SB_50967| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 89
Score = 81.8 bits (193), Expect = 3e-16
Identities = 32/44 (72%), Positives = 39/44 (88%)
Frame = -2
Query: 431 VDVLMPGVGEIVGGSXRXWDHEEXMEGYKREGIDPSPXYWYTDQ 300
VD+LMPGVGEI+GGS R W ++E +EGYKREGIDP+P +WYTDQ
Sbjct: 46 VDLLMPGVGEIIGGSMRMWKYDELIEGYKREGIDPAPYFWYTDQ 89
>SB_19464| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1653
Score = 33.9 bits (74), Expect = 0.075
Identities = 22/53 (41%), Positives = 25/53 (47%)
Frame = +2
Query: 134 QNKDDTSSGRGAQGVHRSRKRG*RHTSRMWYRSRSQQRKRSNPARSRREAPSR 292
Q + D GR G RSR+R R SR RSR + R R R R E P R
Sbjct: 585 QGRPDDKEGRERPGRERSRERHGRERSRERPRSRERPRSRERSDR-RDERPQR 636
>SB_40082| Best HMM Match : tRNA-synt_2 (HMM E-Value=8.1e-37)
Length = 479
Score = 31.9 bits (69), Expect = 0.30
Identities = 17/55 (30%), Positives = 27/55 (49%)
Frame = -2
Query: 440 TESVDVLMPGVGEIVGGSXRXWDHEEXMEGYKREGIDPSPXYWYTDQRKFGSVPH 276
+ S D+ + G E++ G+ R D E+ E GID Y D ++G+ PH
Sbjct: 391 SNSYDMFIRGE-EVLSGAQRIHDPEKLKERASHHGIDLETIKSYIDSFRYGAPPH 444
>SB_27758| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1926
Score = 30.3 bits (65), Expect = 0.92
Identities = 19/44 (43%), Positives = 24/44 (54%)
Frame = +2
Query: 158 GRGAQGVHRSRKRG*RHTSRMWYRSRSQQRKRSNPARSRREAPS 289
G +G RSR R ++SR RSRS+ R R RSRR + S
Sbjct: 654 GGSRRGKRRSRSRSSSYSSRSRSRSRSRDRGRGR-KRSRRRSRS 696
Score = 28.7 bits (61), Expect = 2.8
Identities = 22/62 (35%), Positives = 27/62 (43%)
Frame = +2
Query: 110 YTQRHVIRQNKDDTSSGRGAQGVHRSRKRG*RHTSRMWYRSRSQQRKRSNPARSRREAPS 289
Y+ R R D GR R R R H+S RSRS+ R R R RR + S
Sbjct: 670 YSSRSRSRSRSRDRGRGRKRS---RRRSRSSSHSSSSLSRSRSRSRSR---GRGRRRSRS 723
Query: 290 RT 295
R+
Sbjct: 724 RS 725
>SB_29377| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 548
Score = 28.7 bits (61), Expect = 2.8
Identities = 23/71 (32%), Positives = 34/71 (47%)
Frame = +2
Query: 134 QNKDDTSSGRGAQGVHRSRKRG*RHTSRMWYRSRSQQRKRSNPARSRREAPSRTCAGPYT 313
+++ D+ +G RSR R R+ R +SRS+ RS +RSR + SR PY
Sbjct: 150 RSRSDSRPRSRYRGRSRSRSRD-RYRERRPRKSRSKSLDRSRRSRSR--SYSRPSPSPYR 206
Query: 314 SSXG*GRCLRA 346
S R R+
Sbjct: 207 SRRSRSRTRRS 217
>SB_53400| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1130
Score = 28.3 bits (60), Expect = 3.7
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = -2
Query: 419 MPGVGEIVGGSXRXWDHEEXMEGYKREGID 330
MPG+ E+V G+ + W+ + + +REG D
Sbjct: 225 MPGLLEVVRGAMKEWESKTCVRFVEREGED 254
>SB_45809| Best HMM Match : Vicilin_N (HMM E-Value=4.5)
Length = 215
Score = 28.3 bits (60), Expect = 3.7
Identities = 16/39 (41%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
Frame = +2
Query: 182 RSRKRG*RHTSRMWYRSRSQQRKRSNPARSR-REAPSRT 295
R RKR + + + RSRS+ R+R ++SR R++ SRT
Sbjct: 12 RRRKRSSKSSKKRDRRSRSRSRERRRRSKSRDRDSRSRT 50
Score = 28.3 bits (60), Expect = 3.7
Identities = 20/63 (31%), Positives = 28/63 (44%), Gaps = 1/63 (1%)
Frame = +2
Query: 131 RQNKDDTSSGRGAQGVHRSRKRG*RHTSR-MWYRSRSQQRKRSNPARSRREAPSRTCAGP 307
R+ +S R + RSR+R R SR RSR+ R+RS + R R+
Sbjct: 14 RKRSSKSSKKRDRRSRSRSRERRRRSKSRDRDSRSRTSSRRRSRSSERRHRKDDRSRESS 73
Query: 308 YTS 316
Y S
Sbjct: 74 YDS 76
>SB_20424| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1711
Score = 28.3 bits (60), Expect = 3.7
Identities = 16/39 (41%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
Frame = +2
Query: 182 RSRKRG*RHTSRMWYRSRSQQRKRSNPARSR-REAPSRT 295
R RKR + + + RSRS+ R+R ++SR R++ SRT
Sbjct: 1582 RRRKRSSKSSKKRDRRSRSRSRERRRRSKSRDRDSRSRT 1620
Score = 28.3 bits (60), Expect = 3.7
Identities = 20/63 (31%), Positives = 28/63 (44%), Gaps = 1/63 (1%)
Frame = +2
Query: 131 RQNKDDTSSGRGAQGVHRSRKRG*RHTSR-MWYRSRSQQRKRSNPARSRREAPSRTCAGP 307
R+ +S R + RSR+R R SR RSR+ R+RS + R R+
Sbjct: 1584 RKRSSKSSKKRDRRSRSRSRERRRRSKSRDRDSRSRTSSRRRSRSSERRHRKDDRSRESS 1643
Query: 308 YTS 316
Y S
Sbjct: 1644 YDS 1646
>SB_42659| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 5834
Score = 27.5 bits (58), Expect = 6.5
Identities = 12/19 (63%), Positives = 13/19 (68%)
Frame = +3
Query: 420 QHVNGLGRGGGRPRSATLF 476
QHVNGL G P+S TLF
Sbjct: 5014 QHVNGLLSGSSVPKSQTLF 5032
>SB_36083| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 458
Score = 27.5 bits (58), Expect = 6.5
Identities = 15/58 (25%), Positives = 28/58 (48%)
Frame = +2
Query: 134 QNKDDTSSGRGAQGVHRSRKRG*RHTSRMWYRSRSQQRKRSNPARSRREAPSRTCAGP 307
++++D++SGR +GV R R + W+R+++ +R R R C P
Sbjct: 8 RDREDSASGRRDEGVQPHRARN-QRVKMDWFRAKATDFRRVTTVLGAR--AGRCCTHP 62
>SB_27558| Best HMM Match : dsrm (HMM E-Value=9.6e-18)
Length = 765
Score = 27.5 bits (58), Expect = 6.5
Identities = 16/39 (41%), Positives = 22/39 (56%)
Frame = +2
Query: 179 HRSRKRG*RHTSRMWYRSRSQQRKRSNPARSRREAPSRT 295
+RS + +H S RSRS + KRS R RR + SR+
Sbjct: 269 YRSSRSHRKHRSHS--RSRSPRSKRSRSPRKRRRSKSRS 305
>SB_19884| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3486
Score = 27.5 bits (58), Expect = 6.5
Identities = 23/72 (31%), Positives = 29/72 (40%)
Frame = +2
Query: 137 NKDDTSSGRGAQGVHRSRKRG*RHTSRMWYRSRSQQRKRSNPARSRREAPSRTCAGPYTS 316
N+ + GR HRS + G R S SR R +S RSRR R + + S
Sbjct: 1792 NRSGRNGGRMKSLAHRSMRNGGRMKSLAHRSSRKGGRMKSLAHRSRRNG-GRMKSLAHRS 1850
Query: 317 SXG*GRCLRACN 352
S GR N
Sbjct: 1851 SRNGGRMKSLAN 1862
>SB_18951| Best HMM Match : EGF (HMM E-Value=2.1e-06)
Length = 1223
Score = 27.5 bits (58), Expect = 6.5
Identities = 21/61 (34%), Positives = 29/61 (47%)
Frame = +2
Query: 137 NKDDTSSGRGAQGVHRSRKRG*RHTSRMWYRSRSQQRKRSNPARSRREAPSRTCAGPYTS 316
N S RG+ G + SR RSRSQ + RS +RSR + SR+ + +S
Sbjct: 19 NHSRRSRSRGSNGSRGKAQSPSGSRSRSRSRSRSQSQSRSR-SRSRSRSRSRSRSRSRSS 77
Query: 317 S 319
S
Sbjct: 78 S 78
>SB_53766| Best HMM Match : MSSP (HMM E-Value=1)
Length = 157
Score = 27.5 bits (58), Expect = 6.5
Identities = 23/75 (30%), Positives = 34/75 (45%), Gaps = 1/75 (1%)
Frame = +2
Query: 104 MQYTQRHVIRQNKDDTSSGRGAQGVHRSRKRG*RHTSRMWYRSRSQQRK-RSNPARSRRE 280
M T + NK + G ++SR G + Y+SR+ K R+ P +SR
Sbjct: 33 MTCTNKSRAGPNKSRAGPCKSRAGPYKSRA-GPNKSRAGPYKSRAGPYKSRAGPYKSRA- 90
Query: 281 APSRTCAGPYTSSXG 325
P ++ AGPY S G
Sbjct: 91 GPYKSRAGPYKSRAG 105
Score = 27.5 bits (58), Expect = 6.5
Identities = 16/35 (45%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
Frame = +2
Query: 224 YRSRSQQRK-RSNPARSRREAPSRTCAGPYTSSXG 325
Y+SR+ K R+ P +SR AP ++ AGPY S G
Sbjct: 100 YKSRAGPYKSRAGPYKSRA-APYKSRAGPYKSRAG 133
>SB_45236| Best HMM Match : PRP38 (HMM E-Value=0)
Length = 381
Score = 27.5 bits (58), Expect = 6.5
Identities = 21/59 (35%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Frame = +2
Query: 119 RHVIRQNKDDTSSGRGAQGVHRSRKRG*RHTSRMWYRSRSQQRKRSN-PARSRREAPSR 292
RH R++ D R R R++ R SR RSRS++R+R + RSR +P R
Sbjct: 297 RHRDRRHSRDRDRKRSRS---RDRRKS-RSRSRDRRRSRSRERRRDDRKRRSRERSPKR 351
>SB_40626| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 979
Score = 27.5 bits (58), Expect = 6.5
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = +3
Query: 132 GKIKTIRRRVEALRACTALGSEGRDTRPGC 221
GK + + LR C+AL + RDTR GC
Sbjct: 235 GKARFDNKATNFLRNCSALFALFRDTRAGC 264
>SB_34561| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 448
Score = 27.5 bits (58), Expect = 6.5
Identities = 20/56 (35%), Positives = 25/56 (44%)
Frame = +2
Query: 125 VIRQNKDDTSSGRGAQGVHRSRKRG*RHTSRMWYRSRSQQRKRSNPARSRREAPSR 292
+I+QNK + GRG G +RG R R+R RS P RE P R
Sbjct: 149 IIKQNKKSSRGGRGRGGSRGPGRRGGGPVGR--GRTRG---NRSTPYSRPRELPDR 199
>SB_12902| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1585
Score = 27.5 bits (58), Expect = 6.5
Identities = 11/19 (57%), Positives = 13/19 (68%)
Frame = +3
Query: 177 CTALGSEGRDTRPGCGTGP 233
CT L S RD+ GCG+GP
Sbjct: 377 CTLLISRVRDSPAGCGSGP 395
>SB_53060| Best HMM Match : ResIII (HMM E-Value=0.14)
Length = 1248
Score = 27.1 bits (57), Expect = 8.6
Identities = 18/58 (31%), Positives = 27/58 (46%), Gaps = 2/58 (3%)
Frame = +2
Query: 134 QNKDDTSSGRGAQGVHRSRKRG--*RHTSRMWYRSRSQQRKRSNPARSRREAPSRTCA 301
Q + S G GA+G H K+G +H + S R+++ P +RR A R A
Sbjct: 382 QCRRKNSRGEGARGAHPLHKQGDPQKHEGLAVWACYSHARRQTVPIGTRRMAIDRAFA 439
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,185,827
Number of Sequences: 59808
Number of extensions: 222770
Number of successful extensions: 786
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 697
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 777
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1075029208
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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