Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0270.Seq
(498 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z71262-12|CAA95808.1| 545|Caenorhabditis elegans Hypothetical p... 83 1e-16
AL161712-18|CAC70140.1| 448|Caenorhabditis elegans Hypothetical... 38 0.004
Z66521-2|CAA91395.1| 312|Caenorhabditis elegans Hypothetical pr... 37 0.009
U23484-2|AAC46767.1| 196|Caenorhabditis elegans Sr protein (spl... 34 0.066
Z19152-1|CAA79536.1| 531|Caenorhabditis elegans Hypothetical pr... 32 0.27
AF125459-6|AAN60503.1| 219|Caenorhabditis elegans Hypothetical ... 31 0.35
AF125459-5|AAD12844.1| 345|Caenorhabditis elegans Hypothetical ... 31 0.35
U88180-1|AAB42294.1| 203|Caenorhabditis elegans Hypothetical pr... 30 1.1
Z66521-8|CAA91394.1| 281|Caenorhabditis elegans Hypothetical pr... 29 1.4
U28738-11|AAK68399.3| 166|Caenorhabditis elegans Sr protein (sp... 29 1.4
U28738-10|AAK72066.3| 208|Caenorhabditis elegans Sr protein (sp... 29 1.4
U28738-9|AAA68314.3| 208|Caenorhabditis elegans Sr protein (spl... 29 1.4
Z75539-1|CAA99843.1| 672|Caenorhabditis elegans Hypothetical pr... 29 1.9
Z49911-11|CAA90135.2| 452|Caenorhabditis elegans Hypothetical p... 29 2.5
Z36948-6|CAA85414.2| 452|Caenorhabditis elegans Hypothetical pr... 29 2.5
Z50029-8|CAA90342.2| 668|Caenorhabditis elegans Hypothetical pr... 28 3.3
AL132904-14|CAC35847.2| 258|Caenorhabditis elegans Hypothetical... 28 3.3
AF242767-1|AAG36874.1| 258|Caenorhabditis elegans SF2 protein. 28 3.3
Z29560-2|CAA82662.1| 1131|Caenorhabditis elegans Hypothetical pr... 28 4.3
AF120269-1|AAD13795.1| 1131|Caenorhabditis elegans sex determina... 28 4.3
U64857-15|AAC25858.1| 470|Caenorhabditis elegans Hypothetical p... 27 5.7
AL110479-24|CAJ76966.1| 1084|Caenorhabditis elegans Hypothetical... 27 5.7
AL110479-23|CAB60320.2| 1254|Caenorhabditis elegans Hypothetical... 27 5.7
AC024826-9|AAF60796.1| 49|Caenorhabditis elegans Hypothetical ... 27 5.7
U53147-3|AAM29659.1| 550|Caenorhabditis elegans Hypothetical pr... 27 7.6
U53147-2|AAA96114.2| 935|Caenorhabditis elegans Hypothetical pr... 27 7.6
AL110501-1|CAB54509.1| 2129|Caenorhabditis elegans Hypothetical ... 27 7.6
AF067608-15|AAO38679.1| 470|Caenorhabditis elegans Hypothetical... 27 7.6
AF067608-14|AAK95864.1| 551|Caenorhabditis elegans Hypothetical... 27 7.6
AF000263-10|AAM22070.1| 163|Caenorhabditis elegans Hypothetical... 27 7.6
AF000263-9|AAO21391.2| 184|Caenorhabditis elegans Hypothetical ... 27 7.6
AC006620-1|AAF39780.1| 754|Caenorhabditis elegans Hypothetical ... 27 7.6
Z70271-2|CAA94236.2| 1256|Caenorhabditis elegans Hypothetical pr... 27 10.0
AF000263-12|AAO21392.1| 838|Caenorhabditis elegans Hypothetical... 27 10.0
AF000263-11|AAL77184.1| 866|Caenorhabditis elegans Hypothetical... 27 10.0
AF000263-8|AAK21461.1| 924|Caenorhabditis elegans Hypothetical ... 27 10.0
AF000263-7|AAK21463.1| 925|Caenorhabditis elegans Hypothetical ... 27 10.0
AC006814-2|AAP46269.1| 430|Caenorhabditis elegans Aldehyde dehy... 27 10.0
AC006814-1|AAP46268.1| 499|Caenorhabditis elegans Aldehyde dehy... 27 10.0
>Z71262-12|CAA95808.1| 545|Caenorhabditis elegans Hypothetical
protein F22D6.3a protein.
Length = 545
Score = 83.0 bits (196), Expect = 1e-16
Identities = 38/71 (53%), Positives = 48/71 (67%)
Frame = -2
Query: 488 IKSFKQCRAAWTTAASTESVDVLMPGVGEIVGGSXRXWDHEEXMEGYKREGIDPSPXYWY 309
IK+F R A TESVD+LMPGVGEIVGGS R W ++ + +++ G+D YWY
Sbjct: 441 IKAFYMPRCADDNEL-TESVDLLMPGVGEIVGGSMRIWKEDQLLAAFEKGGLDSKNYYWY 499
Query: 308 TDQRKFGSVPH 276
DQRK+GSVPH
Sbjct: 500 MDQRKYGSVPH 510
Score = 58.4 bits (135), Expect = 3e-09
Identities = 22/30 (73%), Positives = 24/30 (80%)
Frame = -1
Query: 261 GFERFLCWLLDRYHIRDVCLYPRFLERCTP 172
G ERF+CWL D HIRDVCLYPRF+ RC P
Sbjct: 516 GLERFICWLTDTNHIRDVCLYPRFVGRCAP 545
>AL161712-18|CAC70140.1| 448|Caenorhabditis elegans Hypothetical
protein Y66D12A.23 protein.
Length = 448
Score = 37.9 bits (84), Expect = 0.004
Identities = 22/54 (40%), Positives = 29/54 (53%)
Frame = -2
Query: 440 TESVDVLMPGVGEIVGGSXRXWDHEEXMEGYKREGIDPSPXYWYTDQRKFGSVP 279
T S D+L+PG+GE+ GGS R EE + GID WY + R+ G P
Sbjct: 336 TLSFDLLVPGIGELAGGSLREQSAEELQR--RGCGID-----WYLEMRRRGQPP 382
>Z66521-2|CAA91395.1| 312|Caenorhabditis elegans Hypothetical
protein W02B12.3a protein.
Length = 312
Score = 36.7 bits (81), Expect = 0.009
Identities = 24/55 (43%), Positives = 32/55 (58%), Gaps = 4/55 (7%)
Frame = +2
Query: 143 DDTSSGRG-AQGVHRSRKRG*---RHTSRMWYRSRSQQRKRSNPARSRREAPSRT 295
DD+ +GR ++ RSR R R SR SRS+ R RS P RSRRE+ S++
Sbjct: 199 DDSQAGRSRSRSNSRSRSRSRSRDRRRSRSRSSSRSKSRSRSPPKRSRRESKSKS 253
>U23484-2|AAC46767.1| 196|Caenorhabditis elegans Sr protein
(splicing factor) protein4, isoform a protein.
Length = 196
Score = 33.9 bits (74), Expect = 0.066
Identities = 24/55 (43%), Positives = 29/55 (52%), Gaps = 6/55 (10%)
Frame = +2
Query: 146 DTSSGRGAQGVHRSRKRG*RHTSRM--WYRSRSQQRKRSN----PARSRREAPSR 292
D GRG G R R R R SR + RSRS +R RS P+R RR++P R
Sbjct: 102 DERGGRGGGGGRR-RSRSPRRRSRSPRYSRSRSPRRSRSRTRSPPSRDRRDSPDR 155
>Z19152-1|CAA79536.1| 531|Caenorhabditis elegans Hypothetical
protein B0464.1 protein.
Length = 531
Score = 31.9 bits (69), Expect = 0.27
Identities = 18/55 (32%), Positives = 27/55 (49%)
Frame = -2
Query: 440 TESVDVLMPGVGEIVGGSXRXWDHEEXMEGYKREGIDPSPXYWYTDQRKFGSVPH 276
+ S D+ M G EI+ G+ R D + +E K +D + Y D K+G PH
Sbjct: 443 SNSYDMFMRGE-EILSGAQRIHDADMLVERAKHHQVDLAKIQSYIDSFKYGCPPH 496
>AF125459-6|AAN60503.1| 219|Caenorhabditis elegans Hypothetical
protein Y25C1A.8b protein.
Length = 219
Score = 31.5 bits (68), Expect = 0.35
Identities = 20/50 (40%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Frame = +2
Query: 116 QRHVIRQNKD-DTSSGRGAQGVHRSRKRG*RHTSRMWYRSRSQQRKRSNP 262
+ H R N D RG + RSR+R R R RSRS++R+RS P
Sbjct: 140 ESHRKRSNSPRDRDRKRGKRSRSRSRERSYRDDRRDRKRSRSRERRRSPP 189
Score = 28.7 bits (61), Expect = 2.5
Identities = 19/40 (47%), Positives = 22/40 (55%), Gaps = 3/40 (7%)
Frame = +2
Query: 182 RSRKRG*RHTSR---MWYRSRSQQRKRSNPARSRREAPSR 292
R RKRG R SR YR + RKRS +R RR +P R
Sbjct: 152 RDRKRGKRSRSRSRERSYRDDRRDRKRSR-SRERRRSPPR 190
>AF125459-5|AAD12844.1| 345|Caenorhabditis elegans Hypothetical
protein Y25C1A.8a protein.
Length = 345
Score = 31.5 bits (68), Expect = 0.35
Identities = 20/50 (40%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Frame = +2
Query: 116 QRHVIRQNKD-DTSSGRGAQGVHRSRKRG*RHTSRMWYRSRSQQRKRSNP 262
+ H R N D RG + RSR+R R R RSRS++R+RS P
Sbjct: 266 ESHRKRSNSPRDRDRKRGKRSRSRSRERSYRDDRRDRKRSRSRERRRSPP 315
Score = 28.7 bits (61), Expect = 2.5
Identities = 19/40 (47%), Positives = 22/40 (55%), Gaps = 3/40 (7%)
Frame = +2
Query: 182 RSRKRG*RHTSR---MWYRSRSQQRKRSNPARSRREAPSR 292
R RKRG R SR YR + RKRS +R RR +P R
Sbjct: 278 RDRKRGKRSRSRSRERSYRDDRRDRKRSR-SRERRRSPPR 316
>U88180-1|AAB42294.1| 203|Caenorhabditis elegans Hypothetical
protein T27A3.4 protein.
Length = 203
Score = 29.9 bits (64), Expect = 1.1
Identities = 17/54 (31%), Positives = 22/54 (40%)
Frame = +2
Query: 131 RQNKDDTSSGRGAQGVHRSRKRG*RHTSRMWYRSRSQQRKRSNPARSRREAPSR 292
R SS R G RS +R RH S R R + PA+ R + S+
Sbjct: 139 RTRSGSRSSSRSRSGSRRSSRRRSRHRSSSKARGRRASTAKKTPAKRRSRSRSQ 192
>Z66521-8|CAA91394.1| 281|Caenorhabditis elegans Hypothetical
protein W02B12.2 protein.
Length = 281
Score = 29.5 bits (63), Expect = 1.4
Identities = 18/59 (30%), Positives = 27/59 (45%)
Frame = +2
Query: 119 RHVIRQNKDDTSSGRGAQGVHRSRKRG*RHTSRMWYRSRSQQRKRSNPARSRREAPSRT 295
R + + + + +GR + +R R + R RSRS R RS PAR R R+
Sbjct: 163 RDAMNKLQGEDLNGRKLKCTDETRDRSRSRSPRRRSRSRSPTRSRSPPARRRSPGSDRS 221
>U28738-11|AAK68399.3| 166|Caenorhabditis elegans Sr protein
(splicing factor) protein5, isoform b protein.
Length = 166
Score = 29.5 bits (63), Expect = 1.4
Identities = 19/40 (47%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
Frame = +2
Query: 182 RSRKRG*RHTSRM--WYRSRSQQRKRSNPARSRREAPSRT 295
R R R R SR RSRS+ RKRS +RSR + SR+
Sbjct: 88 RRRSRSPRRRSRTPPRRRSRSRDRKRSRRSRSRSSSRSRS 127
Score = 28.3 bits (60), Expect = 3.3
Identities = 16/37 (43%), Positives = 19/37 (51%)
Frame = +2
Query: 182 RSRKRG*RHTSRMWYRSRSQQRKRSNPARSRREAPSR 292
R RKR R SR RSRS R+ + SR +P R
Sbjct: 109 RDRKRSRRSRSRSSSRSRSPVRESRRRSESRSPSPKR 145
Score = 27.5 bits (58), Expect = 5.7
Identities = 17/38 (44%), Positives = 21/38 (55%)
Frame = +2
Query: 182 RSRKRG*RHTSRMWYRSRSQQRKRSNPARSRREAPSRT 295
RSR R + + R RSRS R RS SRR + SR+
Sbjct: 105 RSRSRDRKRSRRS--RSRSSSRSRSPVRESRRRSESRS 140
>U28738-10|AAK72066.3| 208|Caenorhabditis elegans Sr protein
(splicing factor) protein5, isoform d protein.
Length = 208
Score = 29.5 bits (63), Expect = 1.4
Identities = 19/40 (47%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
Frame = +2
Query: 182 RSRKRG*RHTSRM--WYRSRSQQRKRSNPARSRREAPSRT 295
R R R R SR RSRS+ RKRS +RSR + SR+
Sbjct: 88 RRRSRSPRRRSRTPPRRRSRSRDRKRSRRSRSRSSSRSRS 127
Score = 28.3 bits (60), Expect = 3.3
Identities = 16/37 (43%), Positives = 19/37 (51%)
Frame = +2
Query: 182 RSRKRG*RHTSRMWYRSRSQQRKRSNPARSRREAPSR 292
R RKR R SR RSRS R+ + SR +P R
Sbjct: 109 RDRKRSRRSRSRSSSRSRSPVRESRRRSESRSPSPKR 145
Score = 27.5 bits (58), Expect = 5.7
Identities = 17/38 (44%), Positives = 21/38 (55%)
Frame = +2
Query: 182 RSRKRG*RHTSRMWYRSRSQQRKRSNPARSRREAPSRT 295
RSR R + + R RSRS R RS SRR + SR+
Sbjct: 105 RSRSRDRKRSRRS--RSRSSSRSRSPVRESRRRSESRS 140
>U28738-9|AAA68314.3| 208|Caenorhabditis elegans Sr protein
(splicing factor) protein5, isoform a protein.
Length = 208
Score = 29.5 bits (63), Expect = 1.4
Identities = 19/40 (47%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
Frame = +2
Query: 182 RSRKRG*RHTSRM--WYRSRSQQRKRSNPARSRREAPSRT 295
R R R R SR RSRS+ RKRS +RSR + SR+
Sbjct: 88 RRRSRSPRRRSRTPPRRRSRSRDRKRSRRSRSRSSSRSRS 127
Score = 28.3 bits (60), Expect = 3.3
Identities = 16/37 (43%), Positives = 19/37 (51%)
Frame = +2
Query: 182 RSRKRG*RHTSRMWYRSRSQQRKRSNPARSRREAPSR 292
R RKR R SR RSRS R+ + SR +P R
Sbjct: 109 RDRKRSRRSRSRSSSRSRSPVRESRRRSESRSPSPKR 145
Score = 27.5 bits (58), Expect = 5.7
Identities = 17/38 (44%), Positives = 21/38 (55%)
Frame = +2
Query: 182 RSRKRG*RHTSRMWYRSRSQQRKRSNPARSRREAPSRT 295
RSR R + + R RSRS R RS SRR + SR+
Sbjct: 105 RSRSRDRKRSRRS--RSRSSSRSRSPVRESRRRSESRS 140
>Z75539-1|CAA99843.1| 672|Caenorhabditis elegans Hypothetical
protein F28C1.1 protein.
Length = 672
Score = 29.1 bits (62), Expect = 1.9
Identities = 15/27 (55%), Positives = 17/27 (62%)
Frame = +2
Query: 215 RMWYRSRSQQRKRSNPARSRREAPSRT 295
R W RSRS+ R RS P R R + SRT
Sbjct: 398 RSWSRSRSRSRSRS-PPRRRSRSRSRT 423
>Z49911-11|CAA90135.2| 452|Caenorhabditis elegans Hypothetical
protein D2089.1a protein.
Length = 452
Score = 28.7 bits (61), Expect = 2.5
Identities = 18/55 (32%), Positives = 25/55 (45%)
Frame = +2
Query: 131 RQNKDDTSSGRGAQGVHRSRKRG*RHTSRMWYRSRSQQRKRSNPARSRREAPSRT 295
R D R RSR R + R RSRS+ R+R + +R R+ SR+
Sbjct: 316 RDRDRDRKRSRSRDRKRRSRSRDNKDRDRK--RSRSRDRRRRSKSRDRKRERSRS 368
Score = 27.1 bits (57), Expect = 7.6
Identities = 22/55 (40%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Frame = +2
Query: 131 RQNKD-DTSSGRGAQGVHRSRKRG*RHTSRMWYRSRSQQRKRSNPARSRREAPSR 292
R NKD D R RS+ R R R RSRS+ RKR + RSR +P +
Sbjct: 337 RDNKDRDRKRSRSRDRRRRSKSRD-RKRERS--RSRSKDRKR-DKKRSRSRSPEK 387
>Z36948-6|CAA85414.2| 452|Caenorhabditis elegans Hypothetical
protein D2089.1a protein.
Length = 452
Score = 28.7 bits (61), Expect = 2.5
Identities = 18/55 (32%), Positives = 25/55 (45%)
Frame = +2
Query: 131 RQNKDDTSSGRGAQGVHRSRKRG*RHTSRMWYRSRSQQRKRSNPARSRREAPSRT 295
R D R RSR R + R RSRS+ R+R + +R R+ SR+
Sbjct: 316 RDRDRDRKRSRSRDRKRRSRSRDNKDRDRK--RSRSRDRRRRSKSRDRKRERSRS 368
Score = 27.1 bits (57), Expect = 7.6
Identities = 22/55 (40%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Frame = +2
Query: 131 RQNKD-DTSSGRGAQGVHRSRKRG*RHTSRMWYRSRSQQRKRSNPARSRREAPSR 292
R NKD D R RS+ R R R RSRS+ RKR + RSR +P +
Sbjct: 337 RDNKDRDRKRSRSRDRRRRSKSRD-RKRERS--RSRSKDRKR-DKKRSRSRSPEK 387
>Z50029-8|CAA90342.2| 668|Caenorhabditis elegans Hypothetical
protein ZC504.3 protein.
Length = 668
Score = 28.3 bits (60), Expect = 3.3
Identities = 17/58 (29%), Positives = 29/58 (50%)
Frame = +2
Query: 116 QRHVIRQNKDDTSSGRGAQGVHRSRKRG*RHTSRMWYRSRSQQRKRSNPARSRREAPS 289
+RH R+ +DD ++ HR R R SR + R +R+ ++ R+RR+ S
Sbjct: 51 ERHHDRERRDDRYRKVDSRD-HRDRNRRSPAGSRTYCRDEPDRRRNNHSDRNRRDRSS 107
>AL132904-14|CAC35847.2| 258|Caenorhabditis elegans Hypothetical
protein Y111B2A.18 protein.
Length = 258
Score = 28.3 bits (60), Expect = 3.3
Identities = 21/57 (36%), Positives = 29/57 (50%), Gaps = 5/57 (8%)
Frame = +2
Query: 140 KDDTSSGRGAQGVHRSRKRG*-----RHTSRMWYRSRSQQRKRSNPARSRREAPSRT 295
++D SSG G+ G R R R R S + RS+ R RS +RSR + SR+
Sbjct: 195 REDNSSGGGSGGGGRDRSRSRSPRAERRASPKYSPRRSRSRSRSR-SRSRSRSASRS 250
>AF242767-1|AAG36874.1| 258|Caenorhabditis elegans SF2 protein.
Length = 258
Score = 28.3 bits (60), Expect = 3.3
Identities = 21/57 (36%), Positives = 29/57 (50%), Gaps = 5/57 (8%)
Frame = +2
Query: 140 KDDTSSGRGAQGVHRSRKRG*-----RHTSRMWYRSRSQQRKRSNPARSRREAPSRT 295
++D SSG G+ G R R R R S + RS+ R RS +RSR + SR+
Sbjct: 195 REDNSSGGGSGGGGRDRSRSRSPRAERRASPKYSPRRSRSRSRSR-SRSRSRSASRS 250
>Z29560-2|CAA82662.1| 1131|Caenorhabditis elegans Hypothetical
protein K03H1.2 protein.
Length = 1131
Score = 27.9 bits (59), Expect = 4.3
Identities = 19/65 (29%), Positives = 28/65 (43%), Gaps = 6/65 (9%)
Frame = +2
Query: 116 QRHVIRQNKDDTSSG------RGAQGVHRSRKRG*RHTSRMWYRSRSQQRKRSNPARSRR 277
+ H ++ +DD G +G + VH + R M Y+SR R+R RR
Sbjct: 52 REHARKRLEDDDDRGVTESVRKGIEKVHEKHRD--RDDRGMKYKSRDDDRRRDRDRSERR 109
Query: 278 EAPSR 292
E SR
Sbjct: 110 EPSSR 114
>AF120269-1|AAD13795.1| 1131|Caenorhabditis elegans sex
determination protein MOG-1 protein.
Length = 1131
Score = 27.9 bits (59), Expect = 4.3
Identities = 19/65 (29%), Positives = 28/65 (43%), Gaps = 6/65 (9%)
Frame = +2
Query: 116 QRHVIRQNKDDTSSG------RGAQGVHRSRKRG*RHTSRMWYRSRSQQRKRSNPARSRR 277
+ H ++ +DD G +G + VH + R M Y+SR R+R RR
Sbjct: 52 REHARKRLEDDDDRGVTESVRKGIEKVHEKHRD--RDDRGMKYKSRDDDRRRDRDRSERR 109
Query: 278 EAPSR 292
E SR
Sbjct: 110 EPSSR 114
>U64857-15|AAC25858.1| 470|Caenorhabditis elegans Hypothetical
protein C37C3.1 protein.
Length = 470
Score = 27.5 bits (58), Expect = 5.7
Identities = 20/61 (32%), Positives = 28/61 (45%), Gaps = 3/61 (4%)
Frame = +2
Query: 119 RHVIRQNKDDTSSGRGAQGVHRSRKRG*RHTSRMWYRSRSQQRKRS---NPARSRREAPS 289
RH+ R + + SR+R RH+ RSRS RKR + +RSR P+
Sbjct: 317 RHLSRSGSRTPAQRHSRRSESTSRRRSGRHSRS---RSRSPPRKRPVRRSRSRSRSRTPN 373
Query: 290 R 292
R
Sbjct: 374 R 374
>AL110479-24|CAJ76966.1| 1084|Caenorhabditis elegans Hypothetical
protein Y105C5B.21b protein.
Length = 1084
Score = 27.5 bits (58), Expect = 5.7
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = -2
Query: 377 WDHEEXMEGYKREGIDPSPXYWYTDQR 297
W H+E +G+KR G+ + Y T +R
Sbjct: 967 WQHKELHDGFKRSGLKEADFYSGTARR 993
>AL110479-23|CAB60320.2| 1254|Caenorhabditis elegans Hypothetical
protein Y105C5B.21a protein.
Length = 1254
Score = 27.5 bits (58), Expect = 5.7
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = -2
Query: 377 WDHEEXMEGYKREGIDPSPXYWYTDQR 297
W H+E +G+KR G+ + Y T +R
Sbjct: 1137 WQHKELHDGFKRSGLKEADFYSGTARR 1163
>AC024826-9|AAF60796.1| 49|Caenorhabditis elegans Hypothetical
protein Y55F3AM.3b protein.
Length = 49
Score = 27.5 bits (58), Expect = 5.7
Identities = 14/20 (70%), Positives = 15/20 (75%)
Frame = +2
Query: 233 RSQQRKRSNPARSRREAPSR 292
RSQ R+RS PARS R PSR
Sbjct: 23 RSQSRQRS-PARSNRSRPSR 41
>U53147-3|AAM29659.1| 550|Caenorhabditis elegans Hypothetical
protein C01B7.1b protein.
Length = 550
Score = 27.1 bits (57), Expect = 7.6
Identities = 14/41 (34%), Positives = 18/41 (43%)
Frame = +3
Query: 171 RACTALGSEGRDTRPGCGTGPGASRGSAQTQPVAAVRHRAE 293
R + S GR+T G+ A+ SAQ A V H E
Sbjct: 202 RGMNSSPSSGRNTSTSNGSATSAATASAQAAATAIVNHHKE 242
>U53147-2|AAA96114.2| 935|Caenorhabditis elegans Hypothetical
protein C01B7.1a protein.
Length = 935
Score = 27.1 bits (57), Expect = 7.6
Identities = 14/41 (34%), Positives = 18/41 (43%)
Frame = +3
Query: 171 RACTALGSEGRDTRPGCGTGPGASRGSAQTQPVAAVRHRAE 293
R + S GR+T G+ A+ SAQ A V H E
Sbjct: 202 RGMNSSPSSGRNTSTSNGSATSAATASAQAAATAIVNHHKE 242
>AL110501-1|CAB54509.1| 2129|Caenorhabditis elegans Hypothetical
protein Y79H2A.3a protein.
Length = 2129
Score = 27.1 bits (57), Expect = 7.6
Identities = 18/39 (46%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Frame = +2
Query: 182 RSRKRG*RHTSRMWYRSRSQQRKRS-NPARSRREAPSRT 295
RSR R SR RSRS++R RS RSR ++ SR+
Sbjct: 1531 RSRSAERRRRSRTRSRSRSRERYRSRRDRRSRTKSRSRS 1569
>AF067608-15|AAO38679.1| 470|Caenorhabditis elegans Hypothetical
protein B0511.14b protein.
Length = 470
Score = 27.1 bits (57), Expect = 7.6
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = +2
Query: 242 QRKRSNPARSRREAPSRTCAGPYTSS 319
+RKRS P+ RR+ ++ GP TSS
Sbjct: 291 KRKRSVPSNLRRQLENQESTGPSTSS 316
>AF067608-14|AAK95864.1| 551|Caenorhabditis elegans Hypothetical
protein B0511.14a protein.
Length = 551
Score = 27.1 bits (57), Expect = 7.6
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = +2
Query: 242 QRKRSNPARSRREAPSRTCAGPYTSS 319
+RKRS P+ RR+ ++ GP TSS
Sbjct: 291 KRKRSVPSNLRRQLENQESTGPSTSS 316
>AF000263-10|AAM22070.1| 163|Caenorhabditis elegans Hypothetical
protein T08B2.5d protein.
Length = 163
Score = 27.1 bits (57), Expect = 7.6
Identities = 19/66 (28%), Positives = 26/66 (39%), Gaps = 1/66 (1%)
Frame = +2
Query: 113 TQRHVIRQNKDDTSSGRGAQGVHRSRKRG*RHTSRMWYRSRSQQRKRSNPARSRR-EAPS 289
TQ + + S R +R+ R R RSRS+ R +R RR + S
Sbjct: 92 TQPEISIPRSGENKSSRSPSWAREARRSRSRSRDRRGGRSRSRSPSRRRTSRDRRDDRSS 151
Query: 290 RTCAGP 307
R GP
Sbjct: 152 RRRRGP 157
>AF000263-9|AAO21391.2| 184|Caenorhabditis elegans Hypothetical
protein T08B2.5e protein.
Length = 184
Score = 27.1 bits (57), Expect = 7.6
Identities = 19/66 (28%), Positives = 26/66 (39%), Gaps = 1/66 (1%)
Frame = +2
Query: 113 TQRHVIRQNKDDTSSGRGAQGVHRSRKRG*RHTSRMWYRSRSQQRKRSNPARSRR-EAPS 289
TQ + + S R +R+ R R RSRS+ R +R RR + S
Sbjct: 113 TQPEISIPRSGENKSSRSPSWAREARRSRSRSRDRRGGRSRSRSPSRRRTSRDRRDDRSS 172
Query: 290 RTCAGP 307
R GP
Sbjct: 173 RRRRGP 178
>AC006620-1|AAF39780.1| 754|Caenorhabditis elegans Hypothetical
protein C51G7.3 protein.
Length = 754
Score = 27.1 bits (57), Expect = 7.6
Identities = 18/39 (46%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Frame = +2
Query: 182 RSRKRG*RHTSRMWYRSRSQQRKRS-NPARSRREAPSRT 295
RSR R SR RSRS++R RS RSR ++ SR+
Sbjct: 156 RSRSAERRRRSRTRSRSRSRERYRSRRDRRSRTKSRSRS 194
>Z70271-2|CAA94236.2| 1256|Caenorhabditis elegans Hypothetical protein
W08D2.5 protein.
Length = 1256
Score = 26.6 bits (56), Expect = 10.0
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +3
Query: 417 HQHVNGLGRGGGRPRSATLFERL 485
H + G+GG P S+ LFERL
Sbjct: 1201 HMTTSKNGKGGENPHSSALFERL 1223
>AF000263-12|AAO21392.1| 838|Caenorhabditis elegans Hypothetical
protein T08B2.5f protein.
Length = 838
Score = 26.6 bits (56), Expect = 10.0
Identities = 20/63 (31%), Positives = 27/63 (42%)
Frame = +2
Query: 131 RQNKDDTSSGRGAQGVHRSRKRG*RHTSRMWYRSRSQQRKRSNPARSRREAPSRTCAGPY 310
R+++ + RG G RSR R TSR RS +R+R R PS +
Sbjct: 31 RRSRSRSRDRRG--GRSRSRSPSRRRTSRDRRDDRSSRRRRDRSHSRSRSPPSSANGSSH 88
Query: 311 TSS 319
SS
Sbjct: 89 WSS 91
>AF000263-11|AAL77184.1| 866|Caenorhabditis elegans Hypothetical
protein T08B2.5c protein.
Length = 866
Score = 26.6 bits (56), Expect = 10.0
Identities = 20/63 (31%), Positives = 27/63 (42%)
Frame = +2
Query: 131 RQNKDDTSSGRGAQGVHRSRKRG*RHTSRMWYRSRSQQRKRSNPARSRREAPSRTCAGPY 310
R+++ + RG G RSR R TSR RS +R+R R PS +
Sbjct: 59 RRSRSRSRDRRG--GRSRSRSPSRRRTSRDRRDDRSSRRRRDRSHSRSRSPPSSANGSSH 116
Query: 311 TSS 319
SS
Sbjct: 117 WSS 119
>AF000263-8|AAK21461.1| 924|Caenorhabditis elegans Hypothetical
protein T08B2.5a protein.
Length = 924
Score = 26.6 bits (56), Expect = 10.0
Identities = 20/63 (31%), Positives = 27/63 (42%)
Frame = +2
Query: 131 RQNKDDTSSGRGAQGVHRSRKRG*RHTSRMWYRSRSQQRKRSNPARSRREAPSRTCAGPY 310
R+++ + RG G RSR R TSR RS +R+R R PS +
Sbjct: 117 RRSRSRSRDRRG--GRSRSRSPSRRRTSRDRRDDRSSRRRRDRSHSRSRSPPSSANGSSH 174
Query: 311 TSS 319
SS
Sbjct: 175 WSS 177
>AF000263-7|AAK21463.1| 925|Caenorhabditis elegans Hypothetical
protein T08B2.5b protein.
Length = 925
Score = 26.6 bits (56), Expect = 10.0
Identities = 20/63 (31%), Positives = 27/63 (42%)
Frame = +2
Query: 131 RQNKDDTSSGRGAQGVHRSRKRG*RHTSRMWYRSRSQQRKRSNPARSRREAPSRTCAGPY 310
R+++ + RG G RSR R TSR RS +R+R R PS +
Sbjct: 118 RRSRSRSRDRRG--GRSRSRSPSRRRTSRDRRDDRSSRRRRDRSHSRSRSPPSSANGSSH 175
Query: 311 TSS 319
SS
Sbjct: 176 WSS 178
>AC006814-2|AAP46269.1| 430|Caenorhabditis elegans Aldehyde
dehydrogenase protein12, isoform b protein.
Length = 430
Score = 26.6 bits (56), Expect = 10.0
Identities = 16/60 (26%), Positives = 27/60 (45%)
Frame = -2
Query: 455 TTAASTESVDVLMPGVGEIVGGSXRXWDHEEXMEGYKREGIDPSPXYWYTDQRKFGSVPH 276
TT STE+ DV+ P +G++V + + ++ Y + D + T G V H
Sbjct: 21 TTIESTETFDVIEPRIGQVVAKCPKA--TADIVDQYVKAAADAQSAWGETTALDRGKVLH 78
>AC006814-1|AAP46268.1| 499|Caenorhabditis elegans Aldehyde
dehydrogenase protein12, isoform a protein.
Length = 499
Score = 26.6 bits (56), Expect = 10.0
Identities = 16/60 (26%), Positives = 27/60 (45%)
Frame = -2
Query: 455 TTAASTESVDVLMPGVGEIVGGSXRXWDHEEXMEGYKREGIDPSPXYWYTDQRKFGSVPH 276
TT STE+ DV+ P +G++V + + ++ Y + D + T G V H
Sbjct: 21 TTIESTETFDVIEPRIGQVVAKCPKA--TADIVDQYVKAAADAQSAWGETTALDRGKVLH 78
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,911,151
Number of Sequences: 27780
Number of extensions: 157663
Number of successful extensions: 651
Number of sequences better than 10.0: 39
Number of HSP's better than 10.0 without gapping: 540
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 633
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 945973702
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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