Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0269.Seq
         (327 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_P48556 Cluster: 26S proteasome non-ATPase regulatory su...    55   3e-07
UniRef50_Q9V436 Cluster: CG4157-PA; n=2; Sophophora|Rep: CG4157-...    52   2e-06
UniRef50_UPI00005A5FE5 Cluster: PREDICTED: similar to 26S protea...    38   0.032
UniRef50_Q9PQ98 Cluster: Unique hypothetical; n=1; Ureaplasma pa...    33   1.6  
UniRef50_Q7R040 Cluster: GLP_456_10154_8694; n=1; Giardia lambli...    33   1.6  
UniRef50_A4S226 Cluster: Predicted protein; n=2; Ostreococcus|Re...    31   3.7  
UniRef50_A0LZ45 Cluster: Putative uncharacterized protein; n=1; ...    31   6.5  
UniRef50_Q61YX3 Cluster: Putative uncharacterized protein CBG033...    31   6.5  
UniRef50_P02889 Cluster: Probable 26S proteasome non-ATPase regu...    31   6.5  
UniRef50_Q4T928 Cluster: Chromosome undetermined SCAF7646, whole...    30   8.6  

>UniRef50_P48556 Cluster: 26S proteasome non-ATPase regulatory
           subunit 8; n=50; Eumetazoa|Rep: 26S proteasome
           non-ATPase regulatory subunit 8 - Homo sapiens (Human)
          Length = 257

 Score = 54.8 bits (126), Expect = 3e-07
 Identities = 29/66 (43%), Positives = 39/66 (59%)
 Frame = -2

Query: 254 AARRLNLSSQQAVLEYGKKRNWRLGPDNCYRFTSXELXSVAFSGILPSAGLAQQTIEYAR 75
           A R L  ++ + + +Y KKR W LGP+N Y F S +         +PS  LA+Q IEYAR
Sbjct: 194 ATRILFFNTPKKMTDYAKKRGWVLGPNNYYSFASQQ--QKPEDTTIPSTELAKQVIEYAR 251

Query: 74  HLQMIV 57
            L+MIV
Sbjct: 252 QLEMIV 257


>UniRef50_Q9V436 Cluster: CG4157-PA; n=2; Sophophora|Rep: CG4157-PA
           - Drosophila melanogaster (Fruit fly)
          Length = 264

 Score = 52.4 bits (120), Expect = 2e-06
 Identities = 29/66 (43%), Positives = 37/66 (56%)
 Frame = -2

Query: 254 AARRLNLSSQQAVLEYGKKRNWRLGPDNCYRFTSXELXSVAFSGILPSAGLAQQTIEYAR 75
           AA+RLNL     +  +G KR W+L     Y FT     SV    +LPS  LA+Q + YAR
Sbjct: 202 AAKRLNLRVPDEIKAFGAKRQWKLEASGDYSFTD---RSVKPKELLPSEELAEQVLSYAR 258

Query: 74  HLQMIV 57
            L+MIV
Sbjct: 259 DLEMIV 264


>UniRef50_UPI00005A5FE5 Cluster: PREDICTED: similar to 26S
           proteasome non-ATPase regulatory subunit 8 (26S
           proteasome regulatory subunit S14) (p31); n=1; Canis
           lupus familiaris|Rep: PREDICTED: similar to 26S
           proteasome non-ATPase regulatory subunit 8 (26S
           proteasome regulatory subunit S14) (p31) - Canis
           familiaris
          Length = 191

 Score = 38.3 bits (85), Expect = 0.032
 Identities = 21/48 (43%), Positives = 26/48 (54%)
 Frame = -2

Query: 203 KKRNWRLGPDNCYRFTSXELXSVAFSGILPSAGLAQQTIEYARHLQMI 60
           KKR W LG  N Y F S +      +  +PS  LA Q IEYA  L+M+
Sbjct: 146 KKRGWVLGLSNYYSFVSQQQKPEGTT--IPSTELATQVIEYAWQLEMV 191


>UniRef50_Q9PQ98 Cluster: Unique hypothetical; n=1; Ureaplasma
           parvum|Rep: Unique hypothetical - Ureaplasma parvum
           (Ureaplasma urealyticum biotype 1)
          Length = 594

 Score = 32.7 bits (71), Expect = 1.6
 Identities = 15/42 (35%), Positives = 24/42 (57%)
 Frame = -3

Query: 142 HLWPSRAFFHLLGWLNRPLSMPDIFR*LYKNNIFXLSMRNEH 17
           H   +  FFH+L WL+ P  + + F   YKN+I   S+ ++H
Sbjct: 261 HAKNASTFFHVLSWLSVPYQLNNSF---YKNDIDPFSVNSQH 299


>UniRef50_Q7R040 Cluster: GLP_456_10154_8694; n=1; Giardia lamblia
           ATCC 50803|Rep: GLP_456_10154_8694 - Giardia lamblia
           ATCC 50803
          Length = 486

 Score = 32.7 bits (71), Expect = 1.6
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = -2

Query: 215 LEYGKKRNWRLGPDNCYRFTSXELXSVAFSGILPSAG 105
           +E G++R+W   P   YR+TS  +     SG  P+AG
Sbjct: 375 VEMGRRRSWSPSPPPDYRYTSGAIPRSISSGSAPAAG 411


>UniRef50_A4S226 Cluster: Predicted protein; n=2; Ostreococcus|Rep:
           Predicted protein - Ostreococcus lucimarinus CCE9901
          Length = 273

 Score = 31.5 bits (68), Expect = 3.7
 Identities = 19/66 (28%), Positives = 33/66 (50%)
 Frame = -2

Query: 254 AARRLNLSSQQAVLEYGKKRNWRLGPDNCYRFTSXELXSVAFSGILPSAGLAQQTIEYAR 75
           A + L  ++ Q   +Y   R+W +  +    F   E  + A +  +P+A L  QT+ YA+
Sbjct: 210 AMKLLGFANAQEFEKYANARDWTMDANGGVVFN--EEVAPASARDIPAAALINQTLLYAK 267

Query: 74  HLQMIV 57
            L+ IV
Sbjct: 268 ELERIV 273


>UniRef50_A0LZ45 Cluster: Putative uncharacterized protein; n=1;
           Gramella forsetii KT0803|Rep: Putative uncharacterized
           protein - Gramella forsetii (strain KT0803)
          Length = 657

 Score = 30.7 bits (66), Expect = 6.5
 Identities = 19/51 (37%), Positives = 23/51 (45%), Gaps = 2/51 (3%)
 Frame = -2

Query: 248 RRLNLSSQQAVLEYGKKRNWRLGPDNCY--RFTSXELXSVAFSGILPSAGL 102
           R LNL +    LE GKK    L PDN Y   F +  L    F  + P + L
Sbjct: 101 RVLNLKASTYNLENGKKVKQNLNPDNVYTEEFENYNLKKFTFPDVKPGSVL 151


>UniRef50_Q61YX3 Cluster: Putative uncharacterized protein CBG03363;
            n=1; Caenorhabditis briggsae|Rep: Putative
            uncharacterized protein CBG03363 - Caenorhabditis
            briggsae
          Length = 4140

 Score = 30.7 bits (66), Expect = 6.5
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = +2

Query: 35   QXKNIIFIQSSEDVWHTQWSVEPAQQMEECP 127
            Q  N++  QSS+      W+  P QQ+EECP
Sbjct: 3312 QFWNMVQTQSSKFPRSKDWTTAPEQQLEECP 3342


>UniRef50_P02889 Cluster: Probable 26S proteasome non-ATPase
           regulatory subunit 8; n=2; Dictyostelium discoideum|Rep:
           Probable 26S proteasome non-ATPase regulatory subunit 8
           - Dictyostelium discoideum (Slime mold)
          Length = 263

 Score = 30.7 bits (66), Expect = 6.5
 Identities = 18/52 (34%), Positives = 30/52 (57%)
 Frame = -2

Query: 212 EYGKKRNWRLGPDNCYRFTSXELXSVAFSGILPSAGLAQQTIEYARHLQMIV 57
           +Y K+RNW++  D   +F + +  +V     +PS  L  QT+ YA+ L+ IV
Sbjct: 217 QYIKERNWKVQGD-VIQFGNNDNQTVE----IPSLQLIHQTLHYAKELERIV 263


>UniRef50_Q4T928 Cluster: Chromosome undetermined SCAF7646, whole
            genome shotgun sequence; n=1; Tetraodon nigroviridis|Rep:
            Chromosome undetermined SCAF7646, whole genome shotgun
            sequence - Tetraodon nigroviridis (Green puffer)
          Length = 4089

 Score = 30.3 bits (65), Expect = 8.6
 Identities = 22/57 (38%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
 Frame = -2

Query: 227  QQAVLEYGKKRNWRLGPDNCYRFTSXELXSVAFSGILPSAGLAQQTIEYAR-HLQMI 60
            Q + LE  ++  W+LG  +  R    E  SV  SGIL    L QQT E +R HL+ +
Sbjct: 1522 QSSQLEEKQQELWQLG--DSIRVLQGE-ESVLRSGILEKEALVQQTAEQSRLHLEQV 1575


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 265,938,602
Number of Sequences: 1657284
Number of extensions: 3929879
Number of successful extensions: 8216
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 8146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8213
length of database: 575,637,011
effective HSP length: 85
effective length of database: 434,767,871
effective search space used: 9999661033
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)