Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0269.Seq
         (327 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0016 - 88825-90411                                               27   2.6  
03_06_0525 + 34511025-34512168,34512710-34512886,34513131-34513447     26   6.1  
11_06_0132 - 20431122-20431477,20431739-20433758                       26   8.0  

>01_01_0016 - 88825-90411
          Length = 528

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 9/18 (50%), Positives = 14/18 (77%)
 Frame = -3

Query: 130 SRAFFHLLGWLNRPLSMP 77
           +R+F H+LGW+ R L +P
Sbjct: 34  NRSFDHMLGWMQRLLGLP 51


>03_06_0525 + 34511025-34512168,34512710-34512886,34513131-34513447
          Length = 545

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 11/20 (55%), Positives = 16/20 (80%)
 Frame = -3

Query: 130 SRAFFHLLGWLNRPLSMPDI 71
           +R+F H+LGWL+R  + PDI
Sbjct: 62  NRSFDHILGWLSR--TRPDI 79


>11_06_0132 - 20431122-20431477,20431739-20433758
          Length = 791

 Score = 25.8 bits (54), Expect = 8.0
 Identities = 13/45 (28%), Positives = 21/45 (46%), Gaps = 2/45 (4%)
 Frame = -2

Query: 236 LSSQQAVLEYGKKRNWRL--GPDNCYRFTSXELXSVAFSGILPSA 108
           L   +  LE     +W+      NC +F+   L S +F G+LP +
Sbjct: 105 LQLSETFLEARSPNDWKFITALTNCSQFSVLYLASCSFGGVLPDS 149


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,106,408
Number of Sequences: 37544
Number of extensions: 108286
Number of successful extensions: 246
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 243
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 246
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 435246480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)