Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0269.Seq
         (327 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_8763| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   0.89 
SB_33067| Best HMM Match : DUF1117 (HMM E-Value=0.4)                   28   2.1  
SB_42132| Best HMM Match : DAGK_cat (HMM E-Value=1.3e-35)              26   8.3  

>SB_8763| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 588

 Score = 29.1 bits (62), Expect = 0.89
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = +2

Query: 89  WSVEPAQQMEECPRRPQMXILXL*TGSSCQDLTSSYA 199
           WSV  A     C R PQ+ +    T +SC  LTS+++
Sbjct: 428 WSVTLALNSANCGRLPQVFLHCKITNNSCLTLTSNWS 464


>SB_33067| Best HMM Match : DUF1117 (HMM E-Value=0.4)
          Length = 297

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 19/62 (30%), Positives = 34/62 (54%), Gaps = 1/62 (1%)
 Frame = -2

Query: 257 RAARRLNLSSQQAVLEYGKKRNWRLGPDNCYRFTSXELXSVAFSG-ILPSAGLAQQTIEY 81
           + A RL+ +   +    G++ N RL P + ++FTS E  S + S   +P +G AQ++ + 
Sbjct: 59  KQAHRLSTNGTISKSSTGERNN-RLEPTDRHQFTSNEHRSKSISDPTIPDSGNAQESHKQ 117

Query: 80  AR 75
            R
Sbjct: 118 KR 119


>SB_42132| Best HMM Match : DAGK_cat (HMM E-Value=1.3e-35)
          Length = 558

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -1

Query: 174 QLLPVHKXRIXICGLLGHSSICW 106
           +LLP H+ R+ +CG  G  S+ W
Sbjct: 343 RLLPGHRCRVLVCG--GDGSVGW 363


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,322,283
Number of Sequences: 59808
Number of extensions: 121920
Number of successful extensions: 198
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 192
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 198
length of database: 16,821,457
effective HSP length: 72
effective length of database: 12,515,281
effective search space used: 450550116
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)