Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0269.Seq
(327 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
D38047-1|BAA07237.1| 257|Homo sapiens 26S proteasome subunit p3... 55 6e-08
BC065006-1|AAH65006.2| 257|Homo sapiens proteasome (prosome, ma... 55 6e-08
BC001164-1|AAH01164.3| 257|Homo sapiens proteasome (prosome, ma... 55 6e-08
AC005789-1|AAC62833.1| 257|Homo sapiens PP31_HUMAN protein. 55 6e-08
BT019688-1|AAV38494.1| 257|Homo sapiens proteasome (prosome, ma... 50 2e-06
BC027605-1|AAH27605.1| 660|Homo sapiens neural precursor cell e... 30 1.9
BC020799-1|AAH20799.1| 532|Homo sapiens Unknown (protein for IM... 30 1.9
AK093221-1|BAC04099.1| 649|Homo sapiens protein ( Homo sapiens ... 30 1.9
BC110850-1|AAI10851.1| 1041|Homo sapiens KIAA1033 protein protein. 28 5.8
BC104994-1|AAI04995.1| 1173|Homo sapiens KIAA1033 protein. 28 5.8
BC104992-1|AAI04993.1| 1173|Homo sapiens KIAA1033 protein. 28 5.8
BC040936-1|AAH40936.1| 373|Homo sapiens KIAA1033 protein protein. 28 5.8
AB028956-1|BAA82985.1| 1196|Homo sapiens KIAA1033 protein protein. 28 5.8
>D38047-1|BAA07237.1| 257|Homo sapiens 26S proteasome subunit p31
protein.
Length = 257
Score = 54.8 bits (126), Expect = 6e-08
Identities = 29/66 (43%), Positives = 39/66 (59%)
Frame = -2
Query: 254 AARRLNLSSQQAVLEYGKKRNWRLGPDNCYRFTSXELXSVAFSGILPSAGLAQQTIEYAR 75
A R L ++ + + +Y KKR W LGP+N Y F S + +PS LA+Q IEYAR
Sbjct: 194 ATRILFFNTPKKMTDYAKKRGWVLGPNNYYSFASQQ--QKPEDTTIPSTELAKQVIEYAR 251
Query: 74 HLQMIV 57
L+MIV
Sbjct: 252 QLEMIV 257
>BC065006-1|AAH65006.2| 257|Homo sapiens proteasome (prosome,
macropain) 26S subunit, non-ATPase, 8 protein.
Length = 257
Score = 54.8 bits (126), Expect = 6e-08
Identities = 29/66 (43%), Positives = 39/66 (59%)
Frame = -2
Query: 254 AARRLNLSSQQAVLEYGKKRNWRLGPDNCYRFTSXELXSVAFSGILPSAGLAQQTIEYAR 75
A R L ++ + + +Y KKR W LGP+N Y F S + +PS LA+Q IEYAR
Sbjct: 194 ATRILFFNTPKKMTDYAKKRGWVLGPNNYYSFASQQ--QKPEDTTIPSTELAKQVIEYAR 251
Query: 74 HLQMIV 57
L+MIV
Sbjct: 252 QLEMIV 257
>BC001164-1|AAH01164.3| 257|Homo sapiens proteasome (prosome,
macropain) 26S subunit, non-ATPase, 8 protein.
Length = 257
Score = 54.8 bits (126), Expect = 6e-08
Identities = 29/66 (43%), Positives = 39/66 (59%)
Frame = -2
Query: 254 AARRLNLSSQQAVLEYGKKRNWRLGPDNCYRFTSXELXSVAFSGILPSAGLAQQTIEYAR 75
A R L ++ + + +Y KKR W LGP+N Y F S + +PS LA+Q IEYAR
Sbjct: 194 ATRILFFNTPKKMTDYAKKRGWVLGPNNYYSFASQQ--QKPEDTTIPSTELAKQVIEYAR 251
Query: 74 HLQMIV 57
L+MIV
Sbjct: 252 QLEMIV 257
>AC005789-1|AAC62833.1| 257|Homo sapiens PP31_HUMAN protein.
Length = 257
Score = 54.8 bits (126), Expect = 6e-08
Identities = 29/66 (43%), Positives = 39/66 (59%)
Frame = -2
Query: 254 AARRLNLSSQQAVLEYGKKRNWRLGPDNCYRFTSXELXSVAFSGILPSAGLAQQTIEYAR 75
A R L ++ + + +Y KKR W LGP+N Y F S + +PS LA+Q IEYAR
Sbjct: 194 ATRILFFNTPKKMTDYAKKRGWVLGPNNYYSFASQQ--QKPEDTTIPSTELAKQVIEYAR 251
Query: 74 HLQMIV 57
L+MIV
Sbjct: 252 QLEMIV 257
>BT019688-1|AAV38494.1| 257|Homo sapiens proteasome (prosome,
macropain) 26S subunit, non-ATPase, 8 protein.
Length = 257
Score = 49.6 bits (113), Expect = 2e-06
Identities = 28/66 (42%), Positives = 39/66 (59%)
Frame = -2
Query: 254 AARRLNLSSQQAVLEYGKKRNWRLGPDNCYRFTSXELXSVAFSGILPSAGLAQQTIEYAR 75
A R L ++ + + +Y KKR LGP+N Y F S + + +PS LA+Q IEYAR
Sbjct: 194 ATRILFFNTPKKMTDYAKKRGCVLGPNNYYSFASQQQKPEDTT--IPSTELAKQVIEYAR 251
Query: 74 HLQMIV 57
L+MIV
Sbjct: 252 QLEMIV 257
>BC027605-1|AAH27605.1| 660|Homo sapiens neural precursor cell
expressed, developmentally down-regulated 1 protein.
Length = 660
Score = 29.9 bits (64), Expect = 1.9
Identities = 14/34 (41%), Positives = 21/34 (61%)
Frame = -1
Query: 126 GHSSICWAGSTDH*VCQTSSDDCIKIIFFXCQCE 25
G SSICW+ + + V +SS D KI+ C+C+
Sbjct: 36 GISSICWSSNNNFLVTASSSGD--KIVVSSCKCK 67
>BC020799-1|AAH20799.1| 532|Homo sapiens Unknown (protein for
IMAGE:4248253) protein.
Length = 532
Score = 29.9 bits (64), Expect = 1.9
Identities = 14/34 (41%), Positives = 21/34 (61%)
Frame = -1
Query: 126 GHSSICWAGSTDH*VCQTSSDDCIKIIFFXCQCE 25
G SSICW+ + + V +SS D KI+ C+C+
Sbjct: 36 GISSICWSSNNNFLVTASSSGD--KIVVSSCKCK 67
>AK093221-1|BAC04099.1| 649|Homo sapiens protein ( Homo sapiens
cDNA FLJ35902 fis, clone TESTI2009577, highly similar to
NEDD1 PROTEIN. ).
Length = 649
Score = 29.9 bits (64), Expect = 1.9
Identities = 14/34 (41%), Positives = 21/34 (61%)
Frame = -1
Query: 126 GHSSICWAGSTDH*VCQTSSDDCIKIIFFXCQCE 25
G SSICW+ + + V +SS D KI+ C+C+
Sbjct: 36 GISSICWSSNNNFLVTASSSGD--KIVVSSCKCK 67
>BC110850-1|AAI10851.1| 1041|Homo sapiens KIAA1033 protein protein.
Length = 1041
Score = 28.3 bits (60), Expect = 5.8
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = -2
Query: 173 NCYRFTSXELXSVAFSGILPSAGLAQQTIEYARHLQMIV 57
N RF V F ++ GLA++T++ ARHL ++
Sbjct: 939 NAIRFVPDLEDIVNFEELVKEEGLAEETLKAARHLDSVL 977
>BC104994-1|AAI04995.1| 1173|Homo sapiens KIAA1033 protein.
Length = 1173
Score = 28.3 bits (60), Expect = 5.8
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = -2
Query: 173 NCYRFTSXELXSVAFSGILPSAGLAQQTIEYARHLQMIV 57
N RF V F ++ GLA++T++ ARHL ++
Sbjct: 939 NAIRFVPDLEDIVNFEELVKEEGLAEETLKAARHLDSVL 977
>BC104992-1|AAI04993.1| 1173|Homo sapiens KIAA1033 protein.
Length = 1173
Score = 28.3 bits (60), Expect = 5.8
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = -2
Query: 173 NCYRFTSXELXSVAFSGILPSAGLAQQTIEYARHLQMIV 57
N RF V F ++ GLA++T++ ARHL ++
Sbjct: 939 NAIRFVPDLEDIVNFEELVKEEGLAEETLKAARHLDSVL 977
>BC040936-1|AAH40936.1| 373|Homo sapiens KIAA1033 protein protein.
Length = 373
Score = 28.3 bits (60), Expect = 5.8
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = -2
Query: 173 NCYRFTSXELXSVAFSGILPSAGLAQQTIEYARHLQMIV 57
N RF V F ++ GLA++T++ ARHL ++
Sbjct: 139 NAIRFVPDLEDIVNFEELVKEEGLAEETLKAARHLDSVL 177
>AB028956-1|BAA82985.1| 1196|Homo sapiens KIAA1033 protein protein.
Length = 1196
Score = 28.3 bits (60), Expect = 5.8
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = -2
Query: 173 NCYRFTSXELXSVAFSGILPSAGLAQQTIEYARHLQMIV 57
N RF V F ++ GLA++T++ ARHL ++
Sbjct: 962 NAIRFVPDLEDIVNFEELVKEEGLAEETLKAARHLDSVL 1000
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 39,667,625
Number of Sequences: 237096
Number of extensions: 621553
Number of successful extensions: 4595
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 4580
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4590
length of database: 76,859,062
effective HSP length: 79
effective length of database: 58,128,478
effective search space used: 1685725862
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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