Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0269.Seq
         (327 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY084160-1|AAL89898.1|  264|Drosophila melanogaster RE36854p pro...    52   1e-07
AF145314-1|AAF08395.1|  264|Drosophila melanogaster 26S proteaso...    52   1e-07
AE014296-2760|AAF49445.1|  264|Drosophila melanogaster CG4157-PA...    52   1e-07
AE013599-3283|AAM71018.2| 2968|Drosophila melanogaster CG13492-P...    26   9.7  
AE013599-3282|AAF46766.2| 2931|Drosophila melanogaster CG13492-P...    26   9.7  

>AY084160-1|AAL89898.1|  264|Drosophila melanogaster RE36854p
           protein.
          Length = 264

 Score = 52.4 bits (120), Expect = 1e-07
 Identities = 29/66 (43%), Positives = 37/66 (56%)
 Frame = -2

Query: 254 AARRLNLSSQQAVLEYGKKRNWRLGPDNCYRFTSXELXSVAFSGILPSAGLAQQTIEYAR 75
           AA+RLNL     +  +G KR W+L     Y FT     SV    +LPS  LA+Q + YAR
Sbjct: 202 AAKRLNLRVPDEIKAFGAKRQWKLEASGDYSFTD---RSVKPKELLPSEELAEQVLSYAR 258

Query: 74  HLQMIV 57
            L+MIV
Sbjct: 259 DLEMIV 264


>AF145314-1|AAF08395.1|  264|Drosophila melanogaster 26S proteasome
           regulatory complexsubunit p30 protein.
          Length = 264

 Score = 52.4 bits (120), Expect = 1e-07
 Identities = 29/66 (43%), Positives = 37/66 (56%)
 Frame = -2

Query: 254 AARRLNLSSQQAVLEYGKKRNWRLGPDNCYRFTSXELXSVAFSGILPSAGLAQQTIEYAR 75
           AA+RLNL     +  +G KR W+L     Y FT     SV    +LPS  LA+Q + YAR
Sbjct: 202 AAKRLNLRVPDEIKAFGAKRQWKLEASGDYSFTD---RSVKPKELLPSEELAEQVLSYAR 258

Query: 74  HLQMIV 57
            L+MIV
Sbjct: 259 DLEMIV 264


>AE014296-2760|AAF49445.1|  264|Drosophila melanogaster CG4157-PA
           protein.
          Length = 264

 Score = 52.4 bits (120), Expect = 1e-07
 Identities = 29/66 (43%), Positives = 37/66 (56%)
 Frame = -2

Query: 254 AARRLNLSSQQAVLEYGKKRNWRLGPDNCYRFTSXELXSVAFSGILPSAGLAQQTIEYAR 75
           AA+RLNL     +  +G KR W+L     Y FT     SV    +LPS  LA+Q + YAR
Sbjct: 202 AAKRLNLRVPDEIKAFGAKRQWKLEASGDYSFTD---RSVKPKELLPSEELAEQVLSYAR 258

Query: 74  HLQMIV 57
            L+MIV
Sbjct: 259 DLEMIV 264


>AE013599-3283|AAM71018.2| 2968|Drosophila melanogaster CG13492-PB,
           isoform B protein.
          Length = 2968

 Score = 26.2 bits (55), Expect = 9.7
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -2

Query: 194 NWRLGPDNCYRFTSXELXSVAFSGIL 117
           NW  GP NCY  ++ +  S A SG+L
Sbjct: 14  NWHSGPINCYECSTLDECS-AGSGVL 38


>AE013599-3282|AAF46766.2| 2931|Drosophila melanogaster CG13492-PA,
           isoform A protein.
          Length = 2931

 Score = 26.2 bits (55), Expect = 9.7
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -2

Query: 194 NWRLGPDNCYRFTSXELXSVAFSGIL 117
           NW  GP NCY  ++ +  S A SG+L
Sbjct: 14  NWHSGPINCYECSTLDECS-AGSGVL 38


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,041,893
Number of Sequences: 53049
Number of extensions: 191236
Number of successful extensions: 650
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 635
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 647
length of database: 24,988,368
effective HSP length: 75
effective length of database: 21,009,693
effective search space used: 693319869
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)