Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0269.Seq
         (327 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z70683-2|CAA94592.2|  717|Caenorhabditis elegans Hypothetical pr...    27   2.4  
AC025724-1|AAG23375.2| 4177|Caenorhabditis elegans Enhancer of e...    26   5.6  
U53336-10|AAA96182.2|  125|Caenorhabditis elegans Hypothetical p...    26   7.4  

>Z70683-2|CAA94592.2|  717|Caenorhabditis elegans Hypothetical
           protein F13B12.3 protein.
          Length = 717

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = +3

Query: 69  KMSGILNGLLSQPSRWKNAREGHR 140
           K   ++NGL+S P+RW    E  +
Sbjct: 641 KYEAVMNGLISNPNRWDGPTEDEK 664


>AC025724-1|AAG23375.2| 4177|Caenorhabditis elegans Enhancer of efl-1
            mutant phenotypeprotein 1 protein.
          Length = 4177

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = +2

Query: 89   WSVEPAQQMEECP 127
            W+  P QQ+EECP
Sbjct: 3362 WTATPEQQLEECP 3374


>U53336-10|AAA96182.2|  125|Caenorhabditis elegans Hypothetical
           protein K07C11.10 protein.
          Length = 125

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 16/64 (25%), Positives = 27/64 (42%), Gaps = 1/64 (1%)
 Frame = -2

Query: 251 ARRLNLSSQQAVLEYGKKRNWRLGPDNCYRFTSXELXSV-AFSGILPSAGLAQQTIEYAR 75
           A   N   ++ V+  G+K   +L  D CY F    L  +     ++P   +  Q +E  +
Sbjct: 19  ATEKNEKQERVVMSQGEKLEEKLFVDECYLFQDETLTPIFCKPKLIPLKTITTQKLEKMQ 78

Query: 74  HLQM 63
             QM
Sbjct: 79  REQM 82


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,303,595
Number of Sequences: 27780
Number of extensions: 99182
Number of successful extensions: 236
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 235
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 236
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 398409266
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)