Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0269.Seq
         (327 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    23   0.94 
AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    21   3.8  
DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    20   6.6  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    20   6.6  

>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 23.0 bits (47), Expect = 0.94
 Identities = 9/25 (36%), Positives = 16/25 (64%), Gaps = 2/25 (8%)
 Frame = +2

Query: 74  VWHTQWSVEPA--QQMEECPRRPQM 142
           +W T+W V P+  ++ EE  R+ +M
Sbjct: 580 LWPTEWKVRPSTVEEREEFRRQERM 604


>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 21.0 bits (42), Expect = 3.8
 Identities = 7/25 (28%), Positives = 16/25 (64%)
 Frame = +1

Query: 10  YKNVHFALTXKKYYFYTII*RCLAY 84
           YK+++ A   ++YY + +  + L+Y
Sbjct: 450 YKSLNLAAQKREYYSHYVAFKSLSY 474


>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 20.2 bits (40), Expect = 6.6
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = -2

Query: 122 ILPSAGLAQQTIEYARHLQ 66
           IL  AGL +   EY  HL+
Sbjct: 421 ILQYAGLLRNRSEYLNHLR 439


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 20.2 bits (40), Expect = 6.6
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = -3

Query: 91  PLSMPDIFR*LYKNNIFXLSMRNEHF 14
           PLS+PD    L+ NN +   +R   F
Sbjct: 612 PLSVPDSVELLFINNNYINLVRPNTF 637


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 73,716
Number of Sequences: 438
Number of extensions: 1334
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  7217694
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)