Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0269.Seq
         (327 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g44900.1 68415.m05589 armadillo/beta-catenin repeat family pr...    27   3.9  
At2g28120.1 68415.m03416 nodulin family protein similar to nodul...    26   5.2  
At4g09440.1 68417.m01554 hypothetical protein contains Pfam PF04...    26   6.8  
At1g64520.1 68414.m07314 26S proteasome regulatory subunit, puta...    26   6.8  
At5g06980.2 68418.m00791 expressed protein                             25   9.0  
At5g06980.1 68418.m00790 expressed protein                             25   9.0  
At1g72390.1 68414.m08373 expressed protein                             25   9.0  
At1g61610.1 68414.m06942 S-locus lectin protein kinase family pr...    25   9.0  

>At2g44900.1 68415.m05589 armadillo/beta-catenin repeat family
           protein / F-box family protein contains similarity to
           F-box protein FBL2 GI:6010699 from [Rattus norvegicus];
           contains Pfam profiles PF00514:
           Armadillo/beta-catenin-like repeat, PF00646: F-box
           domain
          Length = 930

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = -2

Query: 188 RLGPDNCYRFTSXELXSVAF 129
           +LGPD C R TS  + +VAF
Sbjct: 164 QLGPDFCERITSDAIKAVAF 183


>At2g28120.1 68415.m03416 nodulin family protein similar to
           nodulin-like protein [Arabidopsis thaliana] GI:3329368,
           nodule-specific protein Nlj70 [Lotus japonicus]
           GI:3329366
          Length = 577

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = -2

Query: 170 CYRFTSXELXSVAFSGILPSAGLAQQTIEY 81
           CY+     L +V F G L S GLA +T E+
Sbjct: 516 CYKLPFLILAAVTFFGALVSLGLAIRTREF 545


>At4g09440.1 68417.m01554 hypothetical protein contains Pfam PF04510
           : Family of unknown function (DUF577); common family
           comprised of At4g09440, At1g66000, At1g66060
          Length = 177

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 13/50 (26%), Positives = 23/50 (46%), Gaps = 3/50 (6%)
 Frame = -1

Query: 141 ICGLLGHSSICWAGSTDH*VCQTSSDDCIKIIFFXC---QCEMNIFVVYI 1
           +C +  H  I W G  D+ V Q+ +     +  F C     E + FV+++
Sbjct: 33  VCEMFKHQDIAWDGLRDYIVSQSKTKFQRAVYIFQCLTTPLEDDEFVIHV 82


>At1g64520.1 68414.m07314 26S proteasome regulatory subunit,
           putative (RPN12) similar to 26S proteasome regulatory
           complex subunit p30 GB:AAF08395 GI:6434966 from
           [Drosophila melanogaster]
          Length = 267

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = -2

Query: 119 LPSAGLAQQTIEYARHLQMIV 57
           +PS  L  QT+ YAR L+ IV
Sbjct: 247 IPSLQLINQTLSYARELERIV 267


>At5g06980.2 68418.m00791 expressed protein
          Length = 274

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = +2

Query: 65  SEDVWHTQWSVEPAQQMEEC 124
           S D+W T WS+  ++  E+C
Sbjct: 26  SPDMWGTGWSMNSSEAAEKC 45


>At5g06980.1 68418.m00790 expressed protein
          Length = 275

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = +2

Query: 65  SEDVWHTQWSVEPAQQMEEC 124
           S D+W T WS+  ++  E+C
Sbjct: 26  SPDMWGTGWSMNSSEAAEKC 45


>At1g72390.1 68414.m08373 expressed protein
          Length = 1088

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 8/19 (42%), Positives = 14/19 (73%)
 Frame = +2

Query: 83  TQWSVEPAQQMEECPRRPQ 139
           T W+V P QQ+E+ P++ +
Sbjct: 278 TSWNVNPGQQIEKEPKKEE 296


>At1g61610.1 68414.m06942 S-locus lectin protein kinase family
           protein similar to KI domain interacting kinase 1 [Zea
           mays] gi|2735017|gb|AAB93834; contains S-locus
           glycoprotein family domain, Pfam:PF00954
          Length = 842

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -2

Query: 224 QAVLEYGKKRNWRLGPDNCYRFT 156
           + V+  G+KR WR GP N   FT
Sbjct: 201 EIVIWEGEKRKWRSGPWNSAIFT 223


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,800,080
Number of Sequences: 28952
Number of extensions: 89494
Number of successful extensions: 204
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 199
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 204
length of database: 12,070,560
effective HSP length: 71
effective length of database: 10,014,968
effective search space used: 370553816
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)