Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0268.Seq
         (489 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_P07856 Cluster: Sericin 1 precursor; n=4; Bombyx mori|R...    95   6e-19
UniRef50_Q5DEH6 Cluster: SJCHGC02755 protein; n=2; Schistosoma j...    35   0.84 
UniRef50_UPI00015609DE Cluster: PREDICTED: similar to family wit...    34   2.0  
UniRef50_A7RBY3 Cluster: Putative uncharacterized protein c530R;...    34   2.0  
UniRef50_Q0JIC7 Cluster: Os01g0810900 protein; n=4; Oryza sativa...    33   4.5  
UniRef50_A7DJS8 Cluster: Lytic transglycosylase, catalytic precu...    32   6.0  
UniRef50_A1FRZ4 Cluster: VirB8 precursor; n=2; Xanthomonadaceae|...    32   6.0  
UniRef50_Q0UG02 Cluster: Predicted protein; n=1; Phaeosphaeria n...    32   6.0  
UniRef50_Q4T320 Cluster: Chromosome undetermined SCAF10132, whol...    32   7.9  
UniRef50_Q2LRU4 Cluster: Hypothetical exported protein; n=1; Syn...    32   7.9  
UniRef50_Q23ZH2 Cluster: Putative uncharacterized protein; n=1; ...    32   7.9  

>UniRef50_P07856 Cluster: Sericin 1 precursor; n=4; Bombyx mori|Rep:
            Sericin 1 precursor - Bombyx mori (Silk moth)
          Length = 1186

 Score = 95.5 bits (227), Expect = 6e-19
 Identities = 41/41 (100%), Positives = 41/41 (100%)
 Frame = +1

Query: 127  VSRSHHSGVNRLLHKPGQGKICLCFENIFDIPYHLRKNIGV 249
            VSRSHHSGVNRLLHKPGQGKICLCFENIFDIPYHLRKNIGV
Sbjct: 1146 VSRSHHSGVNRLLHKPGQGKICLCFENIFDIPYHLRKNIGV 1186


>UniRef50_Q5DEH6 Cluster: SJCHGC02755 protein; n=2; Schistosoma
           japonicum|Rep: SJCHGC02755 protein - Schistosoma
           japonicum (Blood fluke)
          Length = 260

 Score = 35.1 bits (77), Expect = 0.84
 Identities = 16/37 (43%), Positives = 19/37 (51%)
 Frame = +2

Query: 2   APTVPAAPIPPQARPGQAQPLQAVLLPRAVQVHRTLP 112
           APT PA P P  A+PG A P     +P+  Q   T P
Sbjct: 158 APTKPAPPTPQPAKPGAAPPKSPAPVPKVAQPPTTKP 194


>UniRef50_UPI00015609DE Cluster: PREDICTED: similar to family with
           sequence similarity 48, member A; n=2; Equus
           caballus|Rep: PREDICTED: similar to family with sequence
           similarity 48, member A - Equus caballus
          Length = 953

 Score = 33.9 bits (74), Expect = 2.0
 Identities = 18/46 (39%), Positives = 28/46 (60%), Gaps = 1/46 (2%)
 Frame = +2

Query: 11  VPAAPIPPQARPGQAQPLQAVLLPRAV-QVHRTLPPLRLVFPGVII 145
           V + P+P   RPGQ+ PLQ V L  A+ Q+ + +  LR++ P V +
Sbjct: 703 VLSPPVPALQRPGQSLPLQRVQLSSALQQLQQQIQHLRILQPPVAV 748


>UniRef50_A7RBY3 Cluster: Putative uncharacterized protein c530R;
           n=1; Chlorella virus AR158|Rep: Putative uncharacterized
           protein c530R - Chlorella virus AR158
          Length = 79

 Score = 33.9 bits (74), Expect = 2.0
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = +3

Query: 18  QHRFHLKHVRGKHNHFRQFFYLGRFKYIGRFLHF 119
           +H  H +H R    HFR F + G F++ G F HF
Sbjct: 12  RHFRHFRHFR-HFRHFRHFRHFGHFRHFGHFGHF 44



 Score = 32.3 bits (70), Expect = 6.0
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = +3

Query: 18  QHRFHLKHVRGKHNHFRQFFYLGRFKYIGRFLHF 119
           +H  H +H R    HFR F + G F + G F HF
Sbjct: 21  RHFRHFRHFR-HFGHFRHFGHFGHFGHFGHFGHF 53


>UniRef50_Q0JIC7 Cluster: Os01g0810900 protein; n=4; Oryza
           sativa|Rep: Os01g0810900 protein - Oryza sativa subsp.
           japonica (Rice)
          Length = 915

 Score = 32.7 bits (71), Expect = 4.5
 Identities = 14/31 (45%), Positives = 22/31 (70%)
 Frame = -1

Query: 264 VFSLLNTDILTEMVRNIEYVFEAKAYFSLTR 172
           V+SL++TD LT    +++Y+ E K Y+S TR
Sbjct: 385 VYSLVHTDNLTTSPDDVDYMKEVKKYYSYTR 415


>UniRef50_A7DJS8 Cluster: Lytic transglycosylase, catalytic
           precursor; n=2; Methylobacterium extorquens PA1|Rep:
           Lytic transglycosylase, catalytic precursor -
           Methylobacterium extorquens PA1
          Length = 298

 Score = 32.3 bits (70), Expect = 6.0
 Identities = 20/39 (51%), Positives = 20/39 (51%), Gaps = 3/39 (7%)
 Frame = +2

Query: 14  PAAPIPPQARPGQAQPLQAVLLP---RAVQVHRTLPPLR 121
           P APIP QA P QA  LQA   P    A  V   LPP R
Sbjct: 223 PQAPIPAQAAPQQAAALQAAAAPTMAAADAVEVPLPPRR 261


>UniRef50_A1FRZ4 Cluster: VirB8 precursor; n=2;
           Xanthomonadaceae|Rep: VirB8 precursor - Stenotrophomonas
           maltophilia R551-3
          Length = 351

 Score = 32.3 bits (70), Expect = 6.0
 Identities = 13/24 (54%), Positives = 16/24 (66%)
 Frame = +2

Query: 11  VPAAPIPPQARPGQAQPLQAVLLP 82
           +PA P+P QA PGQA P Q  + P
Sbjct: 313 MPAQPVPGQATPGQAMPGQPAMRP 336


>UniRef50_Q0UG02 Cluster: Predicted protein; n=1; Phaeosphaeria
           nodorum|Rep: Predicted protein - Phaeosphaeria nodorum
           (Septoria nodorum)
          Length = 402

 Score = 32.3 bits (70), Expect = 6.0
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = +2

Query: 2   APTVPAAPIPPQARPGQAQPLQAVLLP 82
           AP VP AP+ P ARP    P+ A++ P
Sbjct: 49  APIVPPAPVAPVARPAPVAPIIAIVPP 75


>UniRef50_Q4T320 Cluster: Chromosome undetermined SCAF10132, whole
           genome shotgun sequence; n=1; Tetraodon
           nigroviridis|Rep: Chromosome undetermined SCAF10132,
           whole genome shotgun sequence - Tetraodon nigroviridis
           (Green puffer)
          Length = 695

 Score = 31.9 bits (69), Expect = 7.9
 Identities = 21/48 (43%), Positives = 22/48 (45%), Gaps = 7/48 (14%)
 Frame = +2

Query: 2   APTVPAAPIPPQARPG----QAQPLQAVLLPRAVQ---VHRTLPPLRL 124
           AP  PAA   P+  PG      QPL    LP  VQ    H  LPPL L
Sbjct: 537 APAGPAAHAAPEGHPGPRGAHGQPLPGPALPLLVQRGLAHHPLPPLPL 584


>UniRef50_Q2LRU4 Cluster: Hypothetical exported protein; n=1;
           Syntrophus aciditrophicus SB|Rep: Hypothetical exported
           protein - Syntrophus aciditrophicus (strain SB)
          Length = 394

 Score = 31.9 bits (69), Expect = 7.9
 Identities = 17/34 (50%), Positives = 19/34 (55%)
 Frame = +2

Query: 29  PPQARPGQAQPLQAVLLPRAVQVHRTLPPLRLVF 130
           PPQ +P Q QP Q    PR +Q   TLP  R VF
Sbjct: 269 PPQVQPQQGQPRQQ---PRQLQPQHTLPQSREVF 299


>UniRef50_Q23ZH2 Cluster: Putative uncharacterized protein; n=1;
           Tetrahymena thermophila SB210|Rep: Putative
           uncharacterized protein - Tetrahymena thermophila SB210
          Length = 506

 Score = 31.9 bits (69), Expect = 7.9
 Identities = 18/57 (31%), Positives = 29/57 (50%)
 Frame = +3

Query: 45  RGKHNHFRQFFYLGRFKYIGRFLHFV*CFQESSFRREQTFTQAWSRKNMPLLRKHIR 215
           R  ++ F     LGR K   +F         SS++R+Q   Q W+ K +PLLR+ ++
Sbjct: 116 RNSNDSFNSNDSLGRKKRKSQFQEVKKRVFSSSYKRKQNADQFWNNKVIPLLRQKLQ 172


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 425,561,513
Number of Sequences: 1657284
Number of extensions: 8440119
Number of successful extensions: 23401
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 21998
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23293
length of database: 575,637,011
effective HSP length: 95
effective length of database: 418,195,031
effective search space used: 28019067077
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)