Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0268.Seq
         (489 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1...    28   0.87 
SPBC19C2.12 |mrpl51||mitochondrial ribosomal protein subunit L51...    26   2.7  
SPBC16G5.03 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ...    25   6.1  
SPBC725.01 |||aspartate aminotransferase|Schizosaccharomyces pom...    25   6.1  

>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 857

 Score = 27.9 bits (59), Expect = 0.87
 Identities = 18/46 (39%), Positives = 25/46 (54%)
 Frame = +2

Query: 2   APTVPAAPIPPQARPGQAQPLQAVLLPRAVQVHRTLPPLRLVFPGV 139
           AP  PAAP+ P+A P   Q     ++P A+ V +  PP+  V P V
Sbjct: 544 APQRPAAPVVPEA-PSVPQRPAVPVVPEALSVPQ--PPVAPVAPEV 586


>SPBC19C2.12 |mrpl51||mitochondrial ribosomal protein subunit
           L51|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 145

 Score = 26.2 bits (55), Expect = 2.7
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = +3

Query: 6   RQCQQHRFHLKHVRGKHNHFRQFFYLGRFKYI 101
           ++ Q   FH+ + +GKH   R ++  GR K I
Sbjct: 53  KESQDVEFHVTNRQGKHPLIRAYYNTGREKVI 84


>SPBC16G5.03 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 268

 Score = 25.0 bits (52), Expect = 6.1
 Identities = 9/28 (32%), Positives = 14/28 (50%)
 Frame = +3

Query: 150 REQTFTQAWSRKNMPLLRKHIRYSLPSP 233
           R   + +AW     P L  H +Y +P+P
Sbjct: 118 RRFIYQKAWKSYENPSLSSHRQYQIPTP 145


>SPBC725.01 |||aspartate aminotransferase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 437

 Score = 25.0 bits (52), Expect = 6.1
 Identities = 14/35 (40%), Positives = 22/35 (62%)
 Frame = +2

Query: 164 YTSLVKEKYAFASKTYSIFLTISVRISVFNKLNTT 268
           YT L  ++    +K Y I+LT + RIS+ + LNT+
Sbjct: 389 YTGLNPQQVDVLAKQYHIYLTKNGRISI-SGLNTS 422


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,808,710
Number of Sequences: 5004
Number of extensions: 37869
Number of successful extensions: 86
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 82
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 86
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 190087364
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)