Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0268.Seq
(489 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_1089 - 34451982-34452670,34452755-34452814,34453287-344533... 33 0.16
05_05_0033 + 21737075-21737721,21737819-21738134,21738463-21739722 31 0.66
02_03_0367 + 18220099-18220905 29 1.5
04_01_0232 + 2943241-2943604,2944191-2944782,2944993-2945179 29 2.0
07_01_0313 + 2216498-2216953 29 2.6
04_04_0758 - 27826787-27828178 29 2.6
04_04_0757 - 27822139-27823530 29 2.6
05_07_0220 + 28482589-28483752 28 4.6
04_01_0069 - 697811-697876,697956-698166,698265-698359,698448-69... 28 4.6
08_01_0005 + 47929-48201,48663-48788,49009-49054,49188-49270,496... 27 6.1
06_01_0728 - 5356400-5356676,5356888-5357090,5357181-5357474,535... 27 6.1
10_07_0086 - 12755485-12756540,12756994-12757283,12757391-12757643 27 8.1
08_02_0516 + 18080706-18080760,18081796-18081885,18082479-180825... 27 8.1
06_03_0219 - 18227559-18227858,18227864-18228340 27 8.1
>01_06_1089 -
34451982-34452670,34452755-34452814,34453287-34453352,
34454055-34454253,34454470-34454719,34454830-34454898,
34455733-34455804,34456027-34456168,34456544-34457064,
34457166-34457739,34459164-34459269
Length = 915
Score = 32.7 bits (71), Expect = 0.16
Identities = 14/31 (45%), Positives = 22/31 (70%)
Frame = -1
Query: 264 VFSLLNTDILTEMVRNIEYVFEAKAYFSLTR 172
V+SL++TD LT +++Y+ E K Y+S TR
Sbjct: 385 VYSLVHTDNLTTSPDDVDYMKEVKKYYSYTR 415
>05_05_0033 + 21737075-21737721,21737819-21738134,21738463-21739722
Length = 740
Score = 30.7 bits (66), Expect = 0.66
Identities = 12/26 (46%), Positives = 18/26 (69%)
Frame = +3
Query: 6 RQCQQHRFHLKHVRGKHNHFRQFFYL 83
RQ QQ + +H+R +H+H R +FYL
Sbjct: 167 RQQQQQQLKGRHLRPRHSHRRGYFYL 192
>02_03_0367 + 18220099-18220905
Length = 268
Score = 29.5 bits (63), Expect = 1.5
Identities = 16/43 (37%), Positives = 21/43 (48%)
Frame = +2
Query: 5 PTVPAAPIPPQARPGQAQPLQAVLLPRAVQVHRTLPPLRLVFP 133
P P +P+ P+ P Q QP Q A +VH PP +FP
Sbjct: 153 PPPPPSPMSPKVTPAQQQPPQP-----AEKVHDASPPPSSLFP 190
>04_01_0232 + 2943241-2943604,2944191-2944782,2944993-2945179
Length = 380
Score = 29.1 bits (62), Expect = 2.0
Identities = 15/32 (46%), Positives = 20/32 (62%)
Frame = +2
Query: 8 TVPAAPIPPQARPGQAQPLQAVLLPRAVQVHR 103
T+P AP PPQ PG+A P A ++P Q+ R
Sbjct: 151 TLPPAPFPPQ-HPGRADP--AEMMPPTKQIVR 179
>07_01_0313 + 2216498-2216953
Length = 151
Score = 28.7 bits (61), Expect = 2.6
Identities = 18/49 (36%), Positives = 24/49 (48%)
Frame = +2
Query: 5 PTVPAAPIPPQARPGQAQPLQAVLLPRAVQVHRTLPPLRLVFPGVIIQA 151
PTVPA +PP + AV LP V T+PP +V P ++ A
Sbjct: 81 PTVPAVTMPPMP---AVPAVPAVTLPPMPAV-PTVPPNTVVVPAAVVPA 125
>04_04_0758 - 27826787-27828178
Length = 463
Score = 28.7 bits (61), Expect = 2.6
Identities = 14/38 (36%), Positives = 16/38 (42%)
Frame = +2
Query: 11 VPAAPIPPQARPGQAQPLQAVLLPRAVQVHRTLPPLRL 124
V A P P Q Q L +L R + VH PP L
Sbjct: 11 VVAVPFPAQGHLNQLMHLSLLLASRGLDVHYAAPPAHL 48
>04_04_0757 - 27822139-27823530
Length = 463
Score = 28.7 bits (61), Expect = 2.6
Identities = 14/38 (36%), Positives = 16/38 (42%)
Frame = +2
Query: 11 VPAAPIPPQARPGQAQPLQAVLLPRAVQVHRTLPPLRL 124
V A P P Q Q L +L R + VH PP L
Sbjct: 11 VVAVPFPAQGHLNQLMHLSLLLASRGLDVHYAAPPAHL 48
>05_07_0220 + 28482589-28483752
Length = 387
Score = 27.9 bits (59), Expect = 4.6
Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 5/38 (13%)
Frame = +2
Query: 8 TVPAAPIPPQARPGQ-----AQPLQAVLLPRAVQVHRT 106
TVPA P PPQ+ P A P + +LP+++ + T
Sbjct: 172 TVPALPPPPQSPPAALMNPVAVPEKQAVLPKSISIRST 209
>04_01_0069 -
697811-697876,697956-698166,698265-698359,698448-698513,
698595-698643,698720-698770,698856-698908,699263-699331,
699874-699928,700011-700099,700217-700302,700376-700432,
700575-700716,701637-702032
Length = 494
Score = 27.9 bits (59), Expect = 4.6
Identities = 14/27 (51%), Positives = 14/27 (51%)
Frame = +2
Query: 2 APTVPAAPIPPQARPGQAQPLQAVLLP 82
AP PAAP ARP QP AV P
Sbjct: 80 APPPPAAPAVTPARPPPQQPAVAVAAP 106
>08_01_0005 +
47929-48201,48663-48788,49009-49054,49188-49270,
49651-49728,49831-49884,50004-50138,50222-51691
Length = 754
Score = 27.5 bits (58), Expect = 6.1
Identities = 14/44 (31%), Positives = 21/44 (47%)
Frame = +2
Query: 2 APTVPAAPIPPQARPGQAQPLQAVLLPRAVQVHRTLPPLRLVFP 133
AP +P++ PP A P + PLQ + + PPL + P
Sbjct: 321 APPIPSSEPPPSALPNNSFPLQPPGGSLSTLSYTGPPPLMNIMP 364
>06_01_0728 -
5356400-5356676,5356888-5357090,5357181-5357474,
5357940-5358063,5358157-5359496
Length = 745
Score = 27.5 bits (58), Expect = 6.1
Identities = 13/37 (35%), Positives = 15/37 (40%)
Frame = +2
Query: 5 PTVPAAPIPPQARPGQAQPLQAVLLPRAVQVHRTLPP 115
P P P+P A+P Q A P A LPP
Sbjct: 41 PMTPTTPLPEAAKPPQNPEKTAASSPHAPSSRPPLPP 77
>10_07_0086 - 12755485-12756540,12756994-12757283,12757391-12757643
Length = 532
Score = 27.1 bits (57), Expect = 8.1
Identities = 14/45 (31%), Positives = 18/45 (40%)
Frame = +2
Query: 5 PTVPAAPIPPQARPGQAQPLQAVLLPRAVQVHRTLPPLRLVFPGV 139
P P P+P A P A PL + LP + L PG+
Sbjct: 222 PPTPPRPLPDMAGPSSATPLLPLQLPGLAGSSSAMSLPALQLPGM 266
>08_02_0516 +
18080706-18080760,18081796-18081885,18082479-18082573,
18083658-18083726,18083812-18084393
Length = 296
Score = 27.1 bits (57), Expect = 8.1
Identities = 15/34 (44%), Positives = 18/34 (52%)
Frame = +2
Query: 14 PAAPIPPQARPGQAQPLQAVLLPRAVQVHRTLPP 115
P PPQ +P Q Q LQ LP+ +Q LPP
Sbjct: 209 PQPQQPPQLQP-QPQLLQQPQLPQQLQPQSQLPP 241
>06_03_0219 - 18227559-18227858,18227864-18228340
Length = 258
Score = 27.1 bits (57), Expect = 8.1
Identities = 16/36 (44%), Positives = 17/36 (47%)
Frame = +2
Query: 14 PAAPIPPQARPGQAQPLQAVLLPRAVQVHRTLPPLR 121
PAAP PP A P P A+ PR LPP R
Sbjct: 89 PAAPSPPPASPPPPPPRLALRFPRRPP---ELPPRR 121
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,211,437
Number of Sequences: 37544
Number of extensions: 223468
Number of successful extensions: 648
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 609
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 642
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1011709100
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -