Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0268.Seq
         (489 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_33473| Best HMM Match : GST_N (HMM E-Value=0.028)                   32   0.29 
SB_5196| Best HMM Match : No HMM Matches (HMM E-Value=.)               31   0.39 
SB_37008| Best HMM Match : MAM (HMM E-Value=1.3999e-42)                30   1.2  
SB_54293| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.6  
SB_47680| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.6  
SB_31500| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.1  
SB_56182| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.6  
SB_43309| Best HMM Match : RBM1CTR (HMM E-Value=7.5)                   28   4.7  
SB_58406| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.7  
SB_25720| Best HMM Match : Enterotoxin_HS (HMM E-Value=1.9)            24   7.0  
SB_45852| Best HMM Match : I-set (HMM E-Value=0)                       27   8.3  
SB_6424| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   8.3  
SB_39018| Best HMM Match : Crystallin (HMM E-Value=8.5)                27   8.3  

>SB_33473| Best HMM Match : GST_N (HMM E-Value=0.028)
          Length = 276

 Score = 31.9 bits (69), Expect = 0.29
 Identities = 12/19 (63%), Positives = 15/19 (78%)
 Frame = +1

Query: 433 YYQKRPRIRYQAYRXRRPR 489
           Y +KRP+  +QAYR RRPR
Sbjct: 211 YSEKRPKFTHQAYRYRRPR 229


>SB_5196| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 412

 Score = 31.5 bits (68), Expect = 0.39
 Identities = 18/43 (41%), Positives = 22/43 (51%)
 Frame = +2

Query: 14  PAAPIPPQARPGQAQPLQAVLLPRAVQVHRTLPPLRLVFPGVI 142
           PA   P  +RP  A P     LP+   V R LP L  VFPG++
Sbjct: 313 PATAPPSISRPATAPPPVFRGLPQLPPVFRCLPQLPPVFPGLL 355


>SB_37008| Best HMM Match : MAM (HMM E-Value=1.3999e-42)
          Length = 382

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 12/38 (31%), Positives = 17/38 (44%)
 Frame = +2

Query: 2   APTVPAAPIPPQARPGQAQPLQAVLLPRAVQVHRTLPP 115
           +P +P AP+ P   P    P +A+  P        LPP
Sbjct: 217 SPHIPPAPLHPHIPPAPPNPSKAIATPNPPMPETPLPP 254


>SB_54293| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 116

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 12/16 (75%), Positives = 13/16 (81%)
 Frame = +1

Query: 442 KRPRIRYQAYRXRRPR 489
           +RPR  YQAYR RRPR
Sbjct: 90  RRPRRDYQAYRYRRPR 105


>SB_47680| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2749

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 14/38 (36%), Positives = 24/38 (63%), Gaps = 2/38 (5%)
 Frame = +2

Query: 8    TVPAAPIPPQARP--GQAQPLQAVLLPRAVQVHRTLPP 115
            T+P+ P+PP+A    G++QP    L P+A+++    PP
Sbjct: 1007 TLPSTPLPPKALKVLGESQPSTQRLPPKALKLLGESPP 1044


>SB_31500| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1446

 Score = 29.1 bits (62), Expect = 2.1
 Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
 Frame = +3

Query: 135  ESSFRREQTFTQAW--SRKNMPLLRKHIRYSLPSP*EY 242
            E  FRR     Q++  S  + PL RKH R SLP P ++
Sbjct: 1310 EREFRRRHASQQSFDSSTHSHPLSRKHHRVSLPPPGQF 1347


>SB_56182| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 525

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = +1

Query: 160 LLHKPGQGKICLCFENIFDIPYHLR 234
           LL  P  GKI  CF NI   P H++
Sbjct: 279 LLESPSFGKIIECFRNILASPGHIK 303


>SB_43309| Best HMM Match : RBM1CTR (HMM E-Value=7.5)
          Length = 130

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 15/43 (34%), Positives = 24/43 (55%)
 Frame = +2

Query: 5   PTVPAAPIPPQARPGQAQPLQAVLLPRAVQVHRTLPPLRLVFP 133
           P+  A+ IPP  RP  ++P++    P   + H +LP  RL +P
Sbjct: 38  PSENASTIPPITRPLTSRPIRG-QHPPVRRAHDSLPSERLDYP 79


>SB_58406| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 229

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 18/41 (43%), Positives = 21/41 (51%)
 Frame = +2

Query: 14  PAAPIPPQARPGQAQPLQAVLLPRAVQVHRTLPPLRLVFPG 136
           P  PIP QA PGQA P   +  P  VQ  + + P    FPG
Sbjct: 5   PMKPIPGQALPGQAIP--GMQGPYQVQPPQGVSPGMPGFPG 43


>SB_25720| Best HMM Match : Enterotoxin_HS (HMM E-Value=1.9)
          Length = 706

 Score = 23.8 bits (49), Expect(2) = 7.0
 Identities = 12/33 (36%), Positives = 15/33 (45%)
 Frame = -3

Query: 115 WRKRPMYLNRPR*KNCLKWLCLPRTCLRWNRCC 17
           W     Y N  +  +C K  C+   C  WNRCC
Sbjct: 306 WSAEERYNNSCQLGHCKK-ACIG--CPDWNRCC 335



 Score = 21.8 bits (44), Expect(2) = 7.0
 Identities = 5/9 (55%), Positives = 7/9 (77%)
 Frame = -3

Query: 40  CLRWNRCCW 14
           C  WN+CC+
Sbjct: 346 CPSWNKCCY 354


>SB_45852| Best HMM Match : I-set (HMM E-Value=0)
          Length = 1122

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 13/30 (43%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
 Frame = +3

Query: 3    HRQCQQHRFHLKHVRGKHN-HFRQFFYLGR 89
            H Q QQH+FH  H    +N H+R F  + R
Sbjct: 1043 HHQ-QQHQFHHHHHHTHYNYHYRHFLIIDR 1071


>SB_6424| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 219

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 16/34 (47%), Positives = 18/34 (52%)
 Frame = +2

Query: 23  PIPPQARPGQAQPLQAVLLPRAVQVHRTLPPLRL 124
           P P   RPGQAQ L    L     +HR+L PL L
Sbjct: 40  PGPMARRPGQAQTLGT--LVEDAHMHRSLRPLAL 71


>SB_39018| Best HMM Match : Crystallin (HMM E-Value=8.5)
          Length = 67

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
 Frame = -3

Query: 106 RPMYLNRPR*KNCLKW-LCLPRTCLRWNRCCWHCRC 2
           R  Y+   + K  L + +CL  T LR +R C HC C
Sbjct: 22  RQRYVTHDKRKALLSFTVCLCSTHLRSDRLCVHCPC 57


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,439,742
Number of Sequences: 59808
Number of extensions: 282676
Number of successful extensions: 928
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 836
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 926
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1038380485
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)